Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ShhQ62226 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.98■□□□□ 0.31
ShhQ62226 Gm43231-201ENSMUST00000202960 2258 ntBASIC16.98■□□□□ 0.31
ShhQ62226 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ShhQ62226 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
ShhQ62226 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ShhQ62226 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
ShhQ62226 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ShhQ62226 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ShhQ62226 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
ShhQ62226 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
ShhQ62226 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
ShhQ62226 Gm715-201ENSMUST00000117865 831 ntBASIC16.97■□□□□ 0.31
ShhQ62226 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC16.97■□□□□ 0.31
ShhQ62226 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
ShhQ62226 Gm27275-201ENSMUST00000184318 272 ntBASIC16.97■□□□□ 0.31
ShhQ62226 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
ShhQ62226 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
ShhQ62226 Gm26524-201ENSMUST00000192339 390 ntBASIC16.97■□□□□ 0.31
ShhQ62226 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
ShhQ62226 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
ShhQ62226 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC16.97■□□□□ 0.31
ShhQ62226 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ShhQ62226 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ShhQ62226 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ShhQ62226 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
ShhQ62226 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
ShhQ62226 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ShhQ62226 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
ShhQ62226 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
ShhQ62226 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ShhQ62226 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
ShhQ62226 Gm5643-201ENSMUST00000117081 966 ntBASIC16.96■□□□□ 0.31
ShhQ62226 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC16.96■□□□□ 0.31
ShhQ62226 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC16.96■□□□□ 0.31
ShhQ62226 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ShhQ62226 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
ShhQ62226 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ShhQ62226 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
ShhQ62226 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ShhQ62226 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
ShhQ62226 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
ShhQ62226 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
ShhQ62226 BC021767-201ENSMUST00000126387 1716 ntBASIC16.96■□□□□ 0.3
ShhQ62226 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ShhQ62226 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ShhQ62226 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ShhQ62226 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ShhQ62226 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC16.95■□□□□ 0.3
ShhQ62226 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ShhQ62226 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ShhQ62226 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ShhQ62226 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ShhQ62226 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ShhQ62226 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ShhQ62226 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ShhQ62226 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ShhQ62226 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ShhQ62226 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ShhQ62226 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ShhQ62226 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ShhQ62226 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ShhQ62226 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
ShhQ62226 Gm11643-201ENSMUST00000119578 864 ntBASIC16.94■□□□□ 0.3
ShhQ62226 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ShhQ62226 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ShhQ62226 Gm5112-201ENSMUST00000204407 2368 ntBASIC16.94■□□□□ 0.3
ShhQ62226 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ShhQ62226 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
ShhQ62226 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ShhQ62226 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
ShhQ62226 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ShhQ62226 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ShhQ62226 Gm12896-201ENSMUST00000118430 226 ntBASIC16.93■□□□□ 0.3
ShhQ62226 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC16.93■□□□□ 0.3
ShhQ62226 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC16.93■□□□□ 0.3
ShhQ62226 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC16.93■□□□□ 0.3
ShhQ62226 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
ShhQ62226 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC16.93■□□□□ 0.3
ShhQ62226 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
ShhQ62226 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
ShhQ62226 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC16.93■□□□□ 0.3
ShhQ62226 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ShhQ62226 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ShhQ62226 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ShhQ62226 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ShhQ62226 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ShhQ62226 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ShhQ62226 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC16.92■□□□□ 0.3
ShhQ62226 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ShhQ62226 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ShhQ62226 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ShhQ62226 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC16.92■□□□□ 0.3
ShhQ62226 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC16.92■□□□□ 0.3
ShhQ62226 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ShhQ62226 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ShhQ62226 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
ShhQ62226 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
ShhQ62226 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ShhQ62226 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms