Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Msx1P13297 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.29■□□□□ 0.36
Msx1P13297 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Msx1P13297 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC17.29■□□□□ 0.36
Msx1P13297 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC17.29■□□□□ 0.36
Msx1P13297 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Gm9885-202ENSMUST00000186234 2209 ntBASIC17.29■□□□□ 0.36
Msx1P13297 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Msx1P13297 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msx1P13297 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msx1P13297 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msx1P13297 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msx1P13297 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Msx1P13297 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Msx1P13297 Gm2559-201ENSMUST00000201323 363 ntBASIC17.28■□□□□ 0.36
Msx1P13297 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msx1P13297 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msx1P13297 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Msx1P13297 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Msx1P13297 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msx1P13297 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msx1P13297 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.28■□□□□ 0.36
Msx1P13297 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msx1P13297 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Msx1P13297 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Msx1P13297 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msx1P13297 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Msx1P13297 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msx1P13297 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msx1P13297 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msx1P13297 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msx1P13297 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.27■□□□□ 0.36
Msx1P13297 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Msx1P13297 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC17.27■□□□□ 0.36
Msx1P13297 Gm28819-201ENSMUST00000186691 572 ntTSL 5 BASIC17.27■□□□□ 0.36
Msx1P13297 Gm28840-208ENSMUST00000191514 738 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Msx1P13297 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC17.27■□□□□ 0.36
Msx1P13297 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Msx1P13297 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC17.27■□□□□ 0.35
Msx1P13297 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Msx1P13297 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Msx1P13297 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC17.26■□□□□ 0.35
Msx1P13297 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Gm715-201ENSMUST00000117865 831 ntBASIC17.26■□□□□ 0.35
Msx1P13297 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.26■□□□□ 0.35
Msx1P13297 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Msx1P13297 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Dapk1-207ENSMUST00000226059 5009 ntBASIC17.25■□□□□ 0.35
Msx1P13297 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Msx1P13297 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.24■□□□□ 0.35
Msx1P13297 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms