Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col5a1O88207 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col5a1O88207 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col5a1O88207 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col5a1O88207 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col5a1O88207 Gm18032-201ENSMUST00000222541 538 ntBASIC16.59■□□□□ 0.25
Col5a1O88207 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col5a1O88207 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col5a1O88207 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col5a1O88207 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col5a1O88207 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col5a1O88207 Gm25925-201ENSMUST00000158314 306 ntBASIC16.59■□□□□ 0.25
Col5a1O88207 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col5a1O88207 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col5a1O88207 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col5a1O88207 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Col5a1O88207 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col5a1O88207 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col5a1O88207 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col5a1O88207 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Col5a1O88207 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC16.58■□□□□ 0.25
Col5a1O88207 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Col5a1O88207 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Col5a1O88207 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC16.58■□□□□ 0.24
Col5a1O88207 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col5a1O88207 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Col5a1O88207 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Col5a1O88207 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col5a1O88207 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col5a1O88207 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col5a1O88207 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col5a1O88207 Otx2os1-204ENSMUST00000227221 751 ntBASIC16.57■□□□□ 0.24
Col5a1O88207 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
Col5a1O88207 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col5a1O88207 Gm7461-201ENSMUST00000058918 827 ntBASIC16.57■□□□□ 0.24
Col5a1O88207 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col5a1O88207 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col5a1O88207 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC16.57■□□□□ 0.24
Col5a1O88207 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col5a1O88207 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
Col5a1O88207 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Col5a1O88207 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col5a1O88207 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Col5a1O88207 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col5a1O88207 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC16.57■□□□□ 0.24
Col5a1O88207 Gm10138-203ENSMUST00000206952 366 ntBASIC16.56■□□□□ 0.24
Col5a1O88207 AC159205.3-201ENSMUST00000224614 874 ntBASIC16.56■□□□□ 0.24
Col5a1O88207 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col5a1O88207 Gm45560-201ENSMUST00000211492 1472 ntBASIC16.56■□□□□ 0.24
Col5a1O88207 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Col5a1O88207 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col5a1O88207 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col5a1O88207 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col5a1O88207 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Col5a1O88207 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Col5a1O88207 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col5a1O88207 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col5a1O88207 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Col5a1O88207 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC16.55■□□□□ 0.24
Col5a1O88207 Gm38285-201ENSMUST00000192928 922 ntBASIC16.55■□□□□ 0.24
Col5a1O88207 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col5a1O88207 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col5a1O88207 Gm20634-201ENSMUST00000090779 2956 ntBASIC16.55■□□□□ 0.24
Col5a1O88207 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Col5a1O88207 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col5a1O88207 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col5a1O88207 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col5a1O88207 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col5a1O88207 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC16.54■□□□□ 0.24
Col5a1O88207 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC16.54■□□□□ 0.24
Col5a1O88207 Mtag2-201ENSMUST00000058665 714 ntBASIC16.54■□□□□ 0.24
Col5a1O88207 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Gm5784-201ENSMUST00000179344 2478 ntBASIC16.54■□□□□ 0.24
Col5a1O88207 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC16.54■□□□□ 0.24
Col5a1O88207 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Col5a1O88207 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col5a1O88207 Gm43213-201ENSMUST00000151866 1790 ntBASIC16.54■□□□□ 0.24
Col5a1O88207 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Col5a1O88207 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col5a1O88207 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC16.53■□□□□ 0.24
Col5a1O88207 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col5a1O88207 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col5a1O88207 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col5a1O88207 Gm9885-202ENSMUST00000186234 2209 ntBASIC16.53■□□□□ 0.24
Col5a1O88207 Mir6349-201ENSMUST00000184059 97 ntBASIC16.53■□□□□ 0.24
Col5a1O88207 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col5a1O88207 AC156016.1-201ENSMUST00000227190 1035 ntBASIC16.53■□□□□ 0.24
Col5a1O88207 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col5a1O88207 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms