Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC15.18■□□□□ 0.02
Hmgb3O54879 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC15.18■□□□□ 0.02
Hmgb3O54879 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC15.17■□□□□ 0.02
Hmgb3O54879 Gm42911-201ENSMUST00000199360 1630 ntBASIC15.17■□□□□ 0.02
Hmgb3O54879 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb3O54879 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb3O54879 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb3O54879 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Hmgb3O54879 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Hmgb3O54879 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Hmgb3O54879 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC15.17■□□□□ 0.02
Hmgb3O54879 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC15.17■□□□□ 0.02
Hmgb3O54879 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb3O54879 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb3O54879 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb3O54879 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb3O54879 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Hmgb3O54879 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Hmgb3O54879 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb3O54879 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Hmgb3O54879 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb3O54879 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb3O54879 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb3O54879 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC15.16■□□□□ 0.02
Hmgb3O54879 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb3O54879 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC15.16■□□□□ 0.02
Hmgb3O54879 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb3O54879 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb3O54879 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC15.16■□□□□ 0.02
Hmgb3O54879 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Hmgb3O54879 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC15.15■□□□□ 0.02
Hmgb3O54879 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Hmgb3O54879 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Hmgb3O54879 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Hmgb3O54879 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC15.14■□□□□ 0.01
Hmgb3O54879 Gm19439-201ENSMUST00000198195 2273 ntBASIC15.14■□□□□ 0.01
Hmgb3O54879 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Hmgb3O54879 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb3O54879 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb3O54879 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb3O54879 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb3O54879 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb3O54879 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC15.13■□□□□ 0.01
Hmgb3O54879 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb3O54879 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Hmgb3O54879 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb3O54879 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb3O54879 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb3O54879 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb3O54879 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC15.13■□□□□ 0.01
Hmgb3O54879 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
Hmgb3O54879 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb3O54879 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb3O54879 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb3O54879 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC15.12■□□□□ 0.01
Hmgb3O54879 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb3O54879 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb3O54879 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Hmgb3O54879 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Hmgb3O54879 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 66.4 ms