Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28aQ8CEI3 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Ccdc28aQ8CEI3 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28aQ8CEI3 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ccdc28aQ8CEI3 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Gm21956-201ENSMUST00000179946 522 ntBASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ccdc28aQ8CEI3 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc28aQ8CEI3 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
Ccdc28aQ8CEI3 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ccdc28aQ8CEI3 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc28aQ8CEI3 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc28aQ8CEI3 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc28aQ8CEI3 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc28aQ8CEI3 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc28aQ8CEI3 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC19.33■□□□□ 0.68
Ccdc28aQ8CEI3 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Ccdc28aQ8CEI3 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ccdc28aQ8CEI3 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Gm9954-202ENSMUST00000198686 4725 ntBASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ccdc28aQ8CEI3 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC19.3■□□□□ 0.68
Ccdc28aQ8CEI3 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28aQ8CEI3 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Ccdc28aQ8CEI3 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28aQ8CEI3 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28aQ8CEI3 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28aQ8CEI3 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28aQ8CEI3 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28aQ8CEI3 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28aQ8CEI3 Gm43034-201ENSMUST00000198678 1364 ntBASIC19.3■□□□□ 0.68
Ccdc28aQ8CEI3 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28aQ8CEI3 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc28aQ8CEI3 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Gm38205-201ENSMUST00000192243 258 ntBASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc28aQ8CEI3 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc28aQ8CEI3 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.28■□□□□ 0.68
Ccdc28aQ8CEI3 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc28aQ8CEI3 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Ccdc28aQ8CEI3 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc28aQ8CEI3 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
Ccdc28aQ8CEI3 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC19.28■□□□□ 0.68
Ccdc28aQ8CEI3 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.28■□□□□ 0.68
Ccdc28aQ8CEI3 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc28aQ8CEI3 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms