Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Sdc4O35988 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sdc4O35988 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sdc4O35988 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sdc4O35988 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Sdc4O35988 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.87■□□□□ 0.61
Sdc4O35988 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.87■□□□□ 0.61
Sdc4O35988 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc4O35988 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc4O35988 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc4O35988 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc4O35988 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc4O35988 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc4O35988 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc4O35988 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc4O35988 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc4O35988 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc4O35988 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC18.85■□□□□ 0.61
Sdc4O35988 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.85■□□□□ 0.61
Sdc4O35988 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc4O35988 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc4O35988 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc4O35988 Gm13158-201ENSMUST00000122007 736 ntBASIC18.85■□□□□ 0.61
Sdc4O35988 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc4O35988 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Sdc4O35988 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC18.85■□□□□ 0.61
Sdc4O35988 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
Sdc4O35988 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc4O35988 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc4O35988 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc4O35988 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc4O35988 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Sdc4O35988 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc4O35988 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Sdc4O35988 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc4O35988 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
Sdc4O35988 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc4O35988 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.85■□□□□ 0.61
Sdc4O35988 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc4O35988 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc4O35988 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC18.84■□□□□ 0.61
Sdc4O35988 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc4O35988 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC18.84■□□□□ 0.61
Sdc4O35988 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc4O35988 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC18.84■□□□□ 0.61
Sdc4O35988 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc4O35988 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc4O35988 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc4O35988 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc4O35988 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc4O35988 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc4O35988 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC18.84■□□□□ 0.61
Sdc4O35988 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Sdc4O35988 Nrn1-203ENSMUST00000223611 1443 ntBASIC18.83■□□□□ 0.61
Sdc4O35988 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Sdc4O35988 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Sdc4O35988 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
Sdc4O35988 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Sdc4O35988 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Sdc4O35988 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Sdc4O35988 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC18.83■□□□□ 0.6
Sdc4O35988 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC18.83■□□□□ 0.6
Sdc4O35988 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sdc4O35988 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sdc4O35988 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sdc4O35988 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sdc4O35988 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Sdc4O35988 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Sdc4O35988 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Sdc4O35988 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Sdc4O35988 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sdc4O35988 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sdc4O35988 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Sdc4O35988 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Sdc4O35988 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc4O35988 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc4O35988 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc4O35988 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc4O35988 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc4O35988 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc4O35988 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc4O35988 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Sdc4O35988 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc4O35988 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC18.82■□□□□ 0.6
Sdc4O35988 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc4O35988 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc4O35988 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc4O35988 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Sdc4O35988 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc4O35988 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Sdc4O35988 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sdc4O35988 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sdc4O35988 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sdc4O35988 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Sdc4O35988 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Sdc4O35988 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Sdc4O35988 Gm11927-201ENSMUST00000118472 759 ntBASIC18.81■□□□□ 0.6
Sdc4O35988 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
Sdc4O35988 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sdc4O35988 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms