Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col6a3E9PWQ3 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col6a3E9PWQ3 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col6a3E9PWQ3 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col6a3E9PWQ3 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col6a3E9PWQ3 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col6a3E9PWQ3 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC18.52■□□□□ 0.56
Col6a3E9PWQ3 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col6a3E9PWQ3 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col6a3E9PWQ3 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col6a3E9PWQ3 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col6a3E9PWQ3 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col6a3E9PWQ3 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col6a3E9PWQ3 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.52■□□□□ 0.55
Col6a3E9PWQ3 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC18.52■□□□□ 0.55
Col6a3E9PWQ3 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Gm43332-201ENSMUST00000202511 1044 ntBASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Gm23935-201ENSMUST00000102303 57 ntBASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Gm24270-201ENSMUST00000102326 57 ntBASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Gm24245-201ENSMUST00000157318 57 ntBASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Col6a3E9PWQ3 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col6a3E9PWQ3 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col6a3E9PWQ3 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col6a3E9PWQ3 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Col6a3E9PWQ3 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col6a3E9PWQ3 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col6a3E9PWQ3 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col6a3E9PWQ3 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Col6a3E9PWQ3 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
Col6a3E9PWQ3 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col6a3E9PWQ3 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col6a3E9PWQ3 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col6a3E9PWQ3 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col6a3E9PWQ3 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
Col6a3E9PWQ3 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Col6a3E9PWQ3 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col6a3E9PWQ3 Gm6736-201ENSMUST00000166583 948 ntBASIC18.49■□□□□ 0.55
Col6a3E9PWQ3 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col6a3E9PWQ3 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col6a3E9PWQ3 Il17rd-202ENSMUST00000223942 2186 ntBASIC18.49■□□□□ 0.55
Col6a3E9PWQ3 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 AC157650.3-201ENSMUST00000225058 1476 ntBASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Col6a3E9PWQ3 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col6a3E9PWQ3 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col6a3E9PWQ3 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col6a3E9PWQ3 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Col6a3E9PWQ3 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col6a3E9PWQ3 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Col6a3E9PWQ3 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col6a3E9PWQ3 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col6a3E9PWQ3 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC18.47■□□□□ 0.55
Col6a3E9PWQ3 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col6a3E9PWQ3 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col6a3E9PWQ3 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Col6a3E9PWQ3 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Gm16061-201ENSMUST00000122167 857 ntBASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Gm8097-201ENSMUST00000117903 829 ntBASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Gm10175-201ENSMUST00000086013 645 ntBASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Col6a3E9PWQ3 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
Col6a3E9PWQ3 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC18.45■□□□□ 0.54
Col6a3E9PWQ3 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col6a3E9PWQ3 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Col6a3E9PWQ3 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms