Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.1■□□□□ 0.33
ShhQ62226 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
ShhQ62226 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ShhQ62226 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ShhQ62226 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ShhQ62226 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ShhQ62226 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ShhQ62226 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ShhQ62226 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
ShhQ62226 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ShhQ62226 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ShhQ62226 Gm5784-201ENSMUST00000179344 2478 ntBASIC17.09■□□□□ 0.33
ShhQ62226 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ShhQ62226 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ShhQ62226 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ShhQ62226 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ShhQ62226 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ShhQ62226 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
ShhQ62226 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
ShhQ62226 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.09■□□□□ 0.33
ShhQ62226 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
ShhQ62226 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ShhQ62226 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ShhQ62226 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
ShhQ62226 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ShhQ62226 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ShhQ62226 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ShhQ62226 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ShhQ62226 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC17.08■□□□□ 0.33
ShhQ62226 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
ShhQ62226 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ShhQ62226 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
ShhQ62226 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ShhQ62226 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ShhQ62226 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
ShhQ62226 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ShhQ62226 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ShhQ62226 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ShhQ62226 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC17.08■□□□□ 0.32
ShhQ62226 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.08■□□□□ 0.32
ShhQ62226 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
ShhQ62226 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
ShhQ62226 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ShhQ62226 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ShhQ62226 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.07■□□□□ 0.32
ShhQ62226 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ShhQ62226 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ShhQ62226 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ShhQ62226 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
ShhQ62226 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ShhQ62226 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
ShhQ62226 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ShhQ62226 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ShhQ62226 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.07■□□□□ 0.32
ShhQ62226 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ShhQ62226 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ShhQ62226 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ShhQ62226 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
ShhQ62226 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC17.06■□□□□ 0.32
ShhQ62226 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.06■□□□□ 0.32
ShhQ62226 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Gm10655-201ENSMUST00000098658 1397 ntBASIC17.06■□□□□ 0.32
ShhQ62226 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.06■□□□□ 0.32
ShhQ62226 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
ShhQ62226 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC17.06■□□□□ 0.32
ShhQ62226 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
ShhQ62226 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ShhQ62226 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ShhQ62226 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ShhQ62226 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ShhQ62226 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.05■□□□□ 0.32
ShhQ62226 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC17.05■□□□□ 0.32
ShhQ62226 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ShhQ62226 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.05■□□□□ 0.32
ShhQ62226 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.05■□□□□ 0.32
ShhQ62226 AC124603.1-201ENSMUST00000223843 308 ntBASIC17.05■□□□□ 0.32
ShhQ62226 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ShhQ62226 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
ShhQ62226 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ShhQ62226 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
ShhQ62226 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ShhQ62226 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ShhQ62226 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ShhQ62226 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ShhQ62226 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ShhQ62226 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms