Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 AL355802.2-201ENST00000402069 882 ntBASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 AC079089.2-201ENST00000531211 1277 ntBASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 AC080038.1-201ENST00000611274 1154 ntBASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 AC005229.4-201ENST00000610085 2198 ntBASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM3Q53GG5 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
PDLIM3Q53GG5 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM3Q53GG5 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
PDLIM3Q53GG5 ME3-201ENST00000323418 1068 ntTSL 5 BASIC17.27■□□□□ 0.36
PDLIM3Q53GG5 CD99P1-205ENST00000527459 561 ntBASIC17.27■□□□□ 0.36
PDLIM3Q53GG5 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC17.27■□□□□ 0.36
PDLIM3Q53GG5 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.27■□□□□ 0.36
PDLIM3Q53GG5 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.27■□□□□ 0.36
PDLIM3Q53GG5 AC233992.3-201ENST00000607491 485 ntBASIC17.27■□□□□ 0.36
PDLIM3Q53GG5 AC241377.3-202ENST00000626088 1088 ntBASIC17.27■□□□□ 0.36
PDLIM3Q53GG5 AC241585.3-202ENST00000628937 1088 ntBASIC17.27■□□□□ 0.36
PDLIM3Q53GG5 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.27■□□□□ 0.36
PDLIM3Q53GG5 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
PDLIM3Q53GG5 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PDLIM3Q53GG5 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.27■□□□□ 0.35
PDLIM3Q53GG5 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PDLIM3Q53GG5 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.27■□□□□ 0.35
PDLIM3Q53GG5 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
PDLIM3Q53GG5 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PDLIM3Q53GG5 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 GTSE1-AS1-202ENST00000623117 1518 ntBASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM3Q53GG5 SLC25A24-204ENST00000569674 2357 ntBASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM3Q53GG5 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 FEM1AP4-201ENST00000443167 1987 ntBASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 AC027612.3-201ENST00000413684 1047 ntBASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 TSPY20P-201ENST00000450910 630 ntBASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 ME2-206ENST00000638410 2289 ntTSL 5 BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 ME2-210ENST00000639255 2262 ntTSL 5 BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
PDLIM3Q53GG5 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 EI24-211ENST00000534546 1544 ntTSL 2 BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PDLIM3Q53GG5 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms