Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 Spcs1-204ENSMUST00000226782 949 ntBASIC17.82■□□□□ 0.44
Col28a1Q2UY11 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col28a1Q2UY11 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Gm27405-201ENSMUST00000184201 112 ntBASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Gm45906-201ENSMUST00000208911 1430 ntBASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Gm10209-201ENSMUST00000203397 1607 ntBASIC17.8■□□□□ 0.44
Col28a1Q2UY11 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col28a1Q2UY11 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Gm5828-201ENSMUST00000071842 1860 ntBASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Gm42642-201ENSMUST00000200683 355 ntBASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col28a1Q2UY11 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col28a1Q2UY11 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col28a1Q2UY11 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
Col28a1Q2UY11 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col28a1Q2UY11 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col28a1Q2UY11 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col28a1Q2UY11 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col28a1Q2UY11 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col28a1Q2UY11 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
Col28a1Q2UY11 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col28a1Q2UY11 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Col28a1Q2UY11 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Col28a1Q2UY11 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col28a1Q2UY11 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col28a1Q2UY11 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Col28a1Q2UY11 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col28a1Q2UY11 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms