Protein–RNA interactions for Protein: Q9CQA6

Chchd1, Coiled-coil-helix-coiled-coil-helix domain-containing protein 1, mousemouse

Predictions only

Length 118 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chchd1Q9CQA6 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chchd1Q9CQA6 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Chchd1Q9CQA6 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chchd1Q9CQA6 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Chchd1Q9CQA6 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Chchd1Q9CQA6 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chchd1Q9CQA6 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chchd1Q9CQA6 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chchd1Q9CQA6 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chchd1Q9CQA6 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chchd1Q9CQA6 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chchd1Q9CQA6 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chchd1Q9CQA6 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
Chchd1Q9CQA6 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chchd1Q9CQA6 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Chchd1Q9CQA6 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Chchd1Q9CQA6 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chchd1Q9CQA6 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chchd1Q9CQA6 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chchd1Q9CQA6 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Chchd1Q9CQA6 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Chchd1Q9CQA6 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chchd1Q9CQA6 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chchd1Q9CQA6 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chchd1Q9CQA6 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chchd1Q9CQA6 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Chchd1Q9CQA6 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chchd1Q9CQA6 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.63■□□□□ 0.57
Chchd1Q9CQA6 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chchd1Q9CQA6 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chchd1Q9CQA6 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Chchd1Q9CQA6 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chchd1Q9CQA6 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
Chchd1Q9CQA6 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Chchd1Q9CQA6 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC18.6■□□□□ 0.57
Chchd1Q9CQA6 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chchd1Q9CQA6 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC18.58■□□□□ 0.56
Chchd1Q9CQA6 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
Chchd1Q9CQA6 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Chchd1Q9CQA6 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Chchd1Q9CQA6 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chchd1Q9CQA6 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
Chchd1Q9CQA6 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chchd1Q9CQA6 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chchd1Q9CQA6 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chchd1Q9CQA6 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chchd1Q9CQA6 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chchd1Q9CQA6 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Chchd1Q9CQA6 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chchd1Q9CQA6 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chchd1Q9CQA6 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chchd1Q9CQA6 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Chchd1Q9CQA6 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chchd1Q9CQA6 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Chchd1Q9CQA6 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
Chchd1Q9CQA6 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chchd1Q9CQA6 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Chchd1Q9CQA6 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Chchd1Q9CQA6 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Chchd1Q9CQA6 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chchd1Q9CQA6 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chchd1Q9CQA6 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chchd1Q9CQA6 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Chchd1Q9CQA6 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chchd1Q9CQA6 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chchd1Q9CQA6 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chchd1Q9CQA6 Gm27325-201ENSMUST00000175467 74 ntBASIC18.49■□□□□ 0.55
Chchd1Q9CQA6 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chchd1Q9CQA6 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Chchd1Q9CQA6 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Chchd1Q9CQA6 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.48■□□□□ 0.55
Chchd1Q9CQA6 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chchd1Q9CQA6 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chchd1Q9CQA6 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC18.47■□□□□ 0.55
Chchd1Q9CQA6 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chchd1Q9CQA6 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Chchd1Q9CQA6 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chchd1Q9CQA6 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chchd1Q9CQA6 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chchd1Q9CQA6 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chchd1Q9CQA6 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Chchd1Q9CQA6 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chchd1Q9CQA6 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chchd1Q9CQA6 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chchd1Q9CQA6 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chchd1Q9CQA6 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Chchd1Q9CQA6 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chchd1Q9CQA6 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chchd1Q9CQA6 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chchd1Q9CQA6 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chchd1Q9CQA6 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Chchd1Q9CQA6 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Chchd1Q9CQA6 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Chchd1Q9CQA6 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Chchd1Q9CQA6 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chchd1Q9CQA6 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chchd1Q9CQA6 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chchd1Q9CQA6 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chchd1Q9CQA6 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chchd1Q9CQA6 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms