Protein–RNA interactions for Protein: Q91VN6

Ddx41, Probable ATP-dependent RNA helicase DDX41, mousemouse

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx41Q91VN6 Gm43863-201ENSMUST00000203822 1192 ntBASIC28.34■■■□□ 2.13
Ddx41Q91VN6 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Ddx41Q91VN6 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Ddx41Q91VN6 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ddx41Q91VN6 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ddx41Q91VN6 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC28.32■■■□□ 2.12
Ddx41Q91VN6 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Ddx41Q91VN6 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Ddx41Q91VN6 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Ddx41Q91VN6 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC28.28■■■□□ 2.12
Ddx41Q91VN6 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ddx41Q91VN6 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
Ddx41Q91VN6 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ddx41Q91VN6 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
Ddx41Q91VN6 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Ddx41Q91VN6 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx41Q91VN6 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC28.24■■■□□ 2.11
Ddx41Q91VN6 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
Ddx41Q91VN6 Gm6658-202ENSMUST00000209493 1885 ntBASIC28.23■■■□□ 2.11
Ddx41Q91VN6 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Ddx41Q91VN6 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC28.21■■■□□ 2.11
Ddx41Q91VN6 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
Ddx41Q91VN6 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Ddx41Q91VN6 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC28.2■■■□□ 2.11
Ddx41Q91VN6 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ddx41Q91VN6 Gm30346-201ENSMUST00000218641 1699 ntBASIC28.19■■■□□ 2.1
Ddx41Q91VN6 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ddx41Q91VN6 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
Ddx41Q91VN6 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
Ddx41Q91VN6 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Ddx41Q91VN6 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC28.15■■■□□ 2.1
Ddx41Q91VN6 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC28.15■■■□□ 2.1
Ddx41Q91VN6 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
Ddx41Q91VN6 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Ddx41Q91VN6 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
Ddx41Q91VN6 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC28.14■■■□□ 2.09
Ddx41Q91VN6 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.09
Ddx41Q91VN6 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC28.13■■■□□ 2.09
Ddx41Q91VN6 AC157572.2-201ENSMUST00000226970 908 ntBASIC28.13■■■□□ 2.09
Ddx41Q91VN6 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Ddx41Q91VN6 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC28.12■■■□□ 2.09
Ddx41Q91VN6 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Ddx41Q91VN6 Gm9939-201ENSMUST00000067161 1154 ntBASIC28.1■■■□□ 2.09
Ddx41Q91VN6 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
Ddx41Q91VN6 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ddx41Q91VN6 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
Ddx41Q91VN6 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ddx41Q91VN6 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
Ddx41Q91VN6 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Ddx41Q91VN6 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC28.08■■■□□ 2.08
Ddx41Q91VN6 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC28.07■■■□□ 2.08
Ddx41Q91VN6 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
Ddx41Q91VN6 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
Ddx41Q91VN6 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC28.05■■■□□ 2.08
Ddx41Q91VN6 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC28.05■■■□□ 2.08
Ddx41Q91VN6 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC28.04■■■□□ 2.08
Ddx41Q91VN6 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Ddx41Q91VN6 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Ddx41Q91VN6 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
Ddx41Q91VN6 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Ddx41Q91VN6 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
Ddx41Q91VN6 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
Ddx41Q91VN6 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Ddx41Q91VN6 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC28.02■■■□□ 2.08
Ddx41Q91VN6 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.08
Ddx41Q91VN6 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC28■■■□□ 2.07
Ddx41Q91VN6 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Ddx41Q91VN6 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Ddx41Q91VN6 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
Ddx41Q91VN6 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
Ddx41Q91VN6 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Ddx41Q91VN6 Gm8503-201ENSMUST00000118131 455 ntBASIC27.95■■■□□ 2.06
Ddx41Q91VN6 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC27.95■■■□□ 2.06
Ddx41Q91VN6 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Ddx41Q91VN6 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Ddx41Q91VN6 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Ddx41Q91VN6 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC27.95■■■□□ 2.06
Ddx41Q91VN6 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC27.94■■■□□ 2.06
Ddx41Q91VN6 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Ddx41Q91VN6 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
Ddx41Q91VN6 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
Ddx41Q91VN6 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Ddx41Q91VN6 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
Ddx41Q91VN6 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
Ddx41Q91VN6 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC27.89■■■□□ 2.06
Ddx41Q91VN6 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Ddx41Q91VN6 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC27.88■■■□□ 2.05
Ddx41Q91VN6 Gm6821-201ENSMUST00000107540 542 ntBASIC27.88■■■□□ 2.05
Ddx41Q91VN6 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
Ddx41Q91VN6 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Ddx41Q91VN6 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Ddx41Q91VN6 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC27.87■■■□□ 2.05
Ddx41Q91VN6 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
Ddx41Q91VN6 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
Ddx41Q91VN6 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
Ddx41Q91VN6 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
Ddx41Q91VN6 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
Ddx41Q91VN6 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC27.86■■■□□ 2.05
Ddx41Q91VN6 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
Ddx41Q91VN6 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC27.85■■■□□ 2.05
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms