Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
Npc1l1Q6T3U4 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Npc1l1Q6T3U4 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
Npc1l1Q6T3U4 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Npc1l1Q6T3U4 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC30.28■■■□□ 2.44
Npc1l1Q6T3U4 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Npc1l1Q6T3U4 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
Npc1l1Q6T3U4 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Npc1l1Q6T3U4 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Npc1l1Q6T3U4 Gm5987-201ENSMUST00000196433 1151 ntBASIC30.25■■■□□ 2.43
Npc1l1Q6T3U4 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Npc1l1Q6T3U4 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Npc1l1Q6T3U4 Gm6345-201ENSMUST00000180378 1691 ntBASIC30.23■■■□□ 2.43
Npc1l1Q6T3U4 Gm43863-201ENSMUST00000203822 1192 ntBASIC30.22■■■□□ 2.43
Npc1l1Q6T3U4 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
Npc1l1Q6T3U4 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
Npc1l1Q6T3U4 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
Npc1l1Q6T3U4 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Npc1l1Q6T3U4 Gm9939-201ENSMUST00000067161 1154 ntBASIC30.22■■■□□ 2.43
Npc1l1Q6T3U4 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.19■■■□□ 2.42
Npc1l1Q6T3U4 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC30.19■■■□□ 2.42
Npc1l1Q6T3U4 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Npc1l1Q6T3U4 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Npc1l1Q6T3U4 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
Npc1l1Q6T3U4 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Npc1l1Q6T3U4 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Npc1l1Q6T3U4 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Npc1l1Q6T3U4 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Npc1l1Q6T3U4 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC30.15■■■□□ 2.42
Npc1l1Q6T3U4 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Npc1l1Q6T3U4 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Npc1l1Q6T3U4 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
Npc1l1Q6T3U4 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC30.14■■■□□ 2.41
Npc1l1Q6T3U4 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Npc1l1Q6T3U4 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Npc1l1Q6T3U4 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
Npc1l1Q6T3U4 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
Npc1l1Q6T3U4 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC30.09■■■□□ 2.41
Npc1l1Q6T3U4 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
Npc1l1Q6T3U4 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
Npc1l1Q6T3U4 AC157572.2-201ENSMUST00000226970 908 ntBASIC30.07■■■□□ 2.4
Npc1l1Q6T3U4 Gm8503-201ENSMUST00000118131 455 ntBASIC30.06■■■□□ 2.4
Npc1l1Q6T3U4 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Npc1l1Q6T3U4 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Npc1l1Q6T3U4 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC30.05■■■□□ 2.4
Npc1l1Q6T3U4 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Npc1l1Q6T3U4 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Npc1l1Q6T3U4 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
Npc1l1Q6T3U4 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC30.03■■■□□ 2.4
Npc1l1Q6T3U4 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.03■■■□□ 2.4
Npc1l1Q6T3U4 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Npc1l1Q6T3U4 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
Npc1l1Q6T3U4 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Npc1l1Q6T3U4 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.4
Npc1l1Q6T3U4 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
Npc1l1Q6T3U4 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Npc1l1Q6T3U4 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC30■■■□□ 2.39
Npc1l1Q6T3U4 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
Npc1l1Q6T3U4 Gm6821-201ENSMUST00000107540 542 ntBASIC29.99■■■□□ 2.39
Npc1l1Q6T3U4 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC29.99■■■□□ 2.39
Npc1l1Q6T3U4 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
Npc1l1Q6T3U4 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC29.98■■■□□ 2.39
Npc1l1Q6T3U4 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Npc1l1Q6T3U4 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
Npc1l1Q6T3U4 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Npc1l1Q6T3U4 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC29.94■■■□□ 2.38
Npc1l1Q6T3U4 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC29.93■■■□□ 2.38
Npc1l1Q6T3U4 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
Npc1l1Q6T3U4 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Npc1l1Q6T3U4 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Npc1l1Q6T3U4 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
Npc1l1Q6T3U4 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
Npc1l1Q6T3U4 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Npc1l1Q6T3U4 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
Npc1l1Q6T3U4 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
Npc1l1Q6T3U4 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC29.86■■■□□ 2.37
Npc1l1Q6T3U4 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
Npc1l1Q6T3U4 Zxda-201ENSMUST00000117281 2621 ntBASIC29.84■■■□□ 2.37
Npc1l1Q6T3U4 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
Npc1l1Q6T3U4 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
Npc1l1Q6T3U4 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
Npc1l1Q6T3U4 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC29.79■■■□□ 2.36
Npc1l1Q6T3U4 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
Npc1l1Q6T3U4 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC29.79■■■□□ 2.36
Npc1l1Q6T3U4 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
Npc1l1Q6T3U4 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC29.77■■■□□ 2.36
Npc1l1Q6T3U4 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
Npc1l1Q6T3U4 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
Npc1l1Q6T3U4 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
Npc1l1Q6T3U4 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Npc1l1Q6T3U4 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
Npc1l1Q6T3U4 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC29.73■■■□□ 2.35
Npc1l1Q6T3U4 Gm42809-201ENSMUST00000198429 1138 ntBASIC29.72■■■□□ 2.35
Npc1l1Q6T3U4 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC29.72■■■□□ 2.35
Npc1l1Q6T3U4 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
Npc1l1Q6T3U4 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC29.72■■■□□ 2.35
Npc1l1Q6T3U4 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC29.71■■■□□ 2.35
Npc1l1Q6T3U4 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC29.71■■■□□ 2.35
Npc1l1Q6T3U4 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC29.71■■■□□ 2.35
Npc1l1Q6T3U4 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
Retrieved 100 of 76,532 protein–RNA pairs in 10.3 ms