Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC21.85■■□□□ 1.09
Col7a1Q63870 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col7a1Q63870 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC21.84■■□□□ 1.09
Col7a1Q63870 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Col7a1Q63870 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col7a1Q63870 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col7a1Q63870 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.83■■□□□ 1.09
Col7a1Q63870 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col7a1Q63870 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC21.82■■□□□ 1.08
Col7a1Q63870 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC21.82■■□□□ 1.08
Col7a1Q63870 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Col7a1Q63870 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col7a1Q63870 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col7a1Q63870 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col7a1Q63870 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col7a1Q63870 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col7a1Q63870 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC21.79■■□□□ 1.08
Col7a1Q63870 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col7a1Q63870 Gm22567-201ENSMUST00000175542 342 ntBASIC21.78■■□□□ 1.08
Col7a1Q63870 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col7a1Q63870 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC21.76■■□□□ 1.07
Col7a1Q63870 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col7a1Q63870 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC21.75■■□□□ 1.07
Col7a1Q63870 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC21.75■■□□□ 1.07
Col7a1Q63870 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col7a1Q63870 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col7a1Q63870 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC21.74■■□□□ 1.07
Col7a1Q63870 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col7a1Q63870 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col7a1Q63870 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
Col7a1Q63870 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Col7a1Q63870 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Col7a1Q63870 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Col7a1Q63870 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC21.69■■□□□ 1.06
Col7a1Q63870 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col7a1Q63870 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col7a1Q63870 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col7a1Q63870 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Col7a1Q63870 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col7a1Q63870 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.67■■□□□ 1.06
Col7a1Q63870 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
Col7a1Q63870 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Col7a1Q63870 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC21.65■■□□□ 1.06
Col7a1Q63870 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col7a1Q63870 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col7a1Q63870 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC21.64■■□□□ 1.05
Col7a1Q63870 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col7a1Q63870 Gm6311-201ENSMUST00000073790 878 ntBASIC21.62■■□□□ 1.05
Col7a1Q63870 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Col7a1Q63870 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Col7a1Q63870 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col7a1Q63870 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Col7a1Q63870 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21.61■■□□□ 1.05
Col7a1Q63870 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col7a1Q63870 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col7a1Q63870 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Col7a1Q63870 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Col7a1Q63870 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col7a1Q63870 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col7a1Q63870 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
Col7a1Q63870 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Col7a1Q63870 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
Col7a1Q63870 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Col7a1Q63870 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC21.55■■□□□ 1.04
Col7a1Q63870 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col7a1Q63870 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col7a1Q63870 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC21.53■■□□□ 1.04
Col7a1Q63870 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col7a1Q63870 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Col7a1Q63870 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col7a1Q63870 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col7a1Q63870 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC21.51■■□□□ 1.03
Col7a1Q63870 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Col7a1Q63870 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col7a1Q63870 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC21.5■■□□□ 1.03
Col7a1Q63870 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col7a1Q63870 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col7a1Q63870 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Col7a1Q63870 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
Col7a1Q63870 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col7a1Q63870 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Col7a1Q63870 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Col7a1Q63870 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Col7a1Q63870 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Col7a1Q63870 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Col7a1Q63870 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col7a1Q63870 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col7a1Q63870 Gm5812-201ENSMUST00000061073 957 ntBASIC21.47■■□□□ 1.03
Col7a1Q63870 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Col7a1Q63870 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col7a1Q63870 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Col7a1Q63870 AC167019.3-201ENSMUST00000228225 1266 ntBASIC21.45■■□□□ 1.03
Col7a1Q63870 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC21.45■■□□□ 1.02
Col7a1Q63870 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Col7a1Q63870 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Col7a1Q63870 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Col7a1Q63870 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.43■■□□□ 1.02
Col7a1Q63870 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC21.43■■□□□ 1.02
Col7a1Q63870 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col7a1Q63870 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms