Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Vps54Q5SPW0 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Vps54Q5SPW0 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Vps54Q5SPW0 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC30.24■■■□□ 2.43
Vps54Q5SPW0 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Vps54Q5SPW0 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Vps54Q5SPW0 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Vps54Q5SPW0 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Vps54Q5SPW0 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Vps54Q5SPW0 Gm43863-201ENSMUST00000203822 1192 ntBASIC30.2■■■□□ 2.43
Vps54Q5SPW0 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC30.19■■■□□ 2.42
Vps54Q5SPW0 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
Vps54Q5SPW0 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC30.19■■■□□ 2.42
Vps54Q5SPW0 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
Vps54Q5SPW0 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
Vps54Q5SPW0 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
Vps54Q5SPW0 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
Vps54Q5SPW0 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Vps54Q5SPW0 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC30.16■■■□□ 2.42
Vps54Q5SPW0 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC30.15■■■□□ 2.42
Vps54Q5SPW0 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Vps54Q5SPW0 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC30.13■■■□□ 2.41
Vps54Q5SPW0 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
Vps54Q5SPW0 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC30.12■■■□□ 2.41
Vps54Q5SPW0 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC30.12■■■□□ 2.41
Vps54Q5SPW0 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
Vps54Q5SPW0 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Vps54Q5SPW0 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Vps54Q5SPW0 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Vps54Q5SPW0 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
Vps54Q5SPW0 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
Vps54Q5SPW0 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
Vps54Q5SPW0 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
Vps54Q5SPW0 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC30.07■■■□□ 2.4
Vps54Q5SPW0 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Vps54Q5SPW0 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Vps54Q5SPW0 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Vps54Q5SPW0 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Vps54Q5SPW0 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Vps54Q5SPW0 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Vps54Q5SPW0 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Vps54Q5SPW0 AC157572.2-201ENSMUST00000226970 908 ntBASIC30.02■■■□□ 2.4
Vps54Q5SPW0 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Vps54Q5SPW0 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Vps54Q5SPW0 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
Vps54Q5SPW0 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
Vps54Q5SPW0 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Vps54Q5SPW0 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC30■■■□□ 2.39
Vps54Q5SPW0 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
Vps54Q5SPW0 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC29.98■■■□□ 2.39
Vps54Q5SPW0 Zxda-201ENSMUST00000117281 2621 ntBASIC29.96■■■□□ 2.39
Vps54Q5SPW0 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC29.95■■■□□ 2.39
Vps54Q5SPW0 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC29.95■■■□□ 2.39
Vps54Q5SPW0 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
Vps54Q5SPW0 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC29.95■■■□□ 2.38
Vps54Q5SPW0 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC29.94■■■□□ 2.38
Vps54Q5SPW0 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
Vps54Q5SPW0 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
Vps54Q5SPW0 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
Vps54Q5SPW0 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Vps54Q5SPW0 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC29.88■■■□□ 2.37
Vps54Q5SPW0 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
Vps54Q5SPW0 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC29.87■■■□□ 2.37
Vps54Q5SPW0 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Vps54Q5SPW0 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Vps54Q5SPW0 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
Vps54Q5SPW0 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC29.84■■■□□ 2.37
Vps54Q5SPW0 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC29.84■■■□□ 2.37
Vps54Q5SPW0 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
Vps54Q5SPW0 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Vps54Q5SPW0 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC29.82■■■□□ 2.36
Vps54Q5SPW0 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC29.82■■■□□ 2.36
Vps54Q5SPW0 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
Vps54Q5SPW0 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
Vps54Q5SPW0 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
Vps54Q5SPW0 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Vps54Q5SPW0 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
Vps54Q5SPW0 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC29.78■■■□□ 2.36
Vps54Q5SPW0 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
Vps54Q5SPW0 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
Vps54Q5SPW0 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
Vps54Q5SPW0 Gm43445-201ENSMUST00000198564 2091 ntBASIC29.76■■■□□ 2.36
Vps54Q5SPW0 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Vps54Q5SPW0 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Vps54Q5SPW0 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
Vps54Q5SPW0 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC29.75■■■□□ 2.35
Vps54Q5SPW0 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC29.75■■■□□ 2.35
Vps54Q5SPW0 Gm6206-201ENSMUST00000133472 2199 ntBASIC29.73■■■□□ 2.35
Vps54Q5SPW0 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC29.71■■■□□ 2.35
Vps54Q5SPW0 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC29.71■■■□□ 2.35
Vps54Q5SPW0 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC29.71■■■□□ 2.35
Vps54Q5SPW0 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Vps54Q5SPW0 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC29.69■■■□□ 2.34
Vps54Q5SPW0 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
Vps54Q5SPW0 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC29.68■■■□□ 2.34
Vps54Q5SPW0 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Vps54Q5SPW0 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Vps54Q5SPW0 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Vps54Q5SPW0 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
Vps54Q5SPW0 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
Retrieved 100 of 76,532 protein–RNA pairs in 79.7 ms