Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm9397-201ENSMUST00000200125 605 ntBASIC26.61■■□□□ 1.85
Upf3bQ3ULL6 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC26.61■■□□□ 1.85
Upf3bQ3ULL6 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Upf3bQ3ULL6 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Upf3bQ3ULL6 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Upf3bQ3ULL6 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Upf3bQ3ULL6 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Upf3bQ3ULL6 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Upf3bQ3ULL6 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Upf3bQ3ULL6 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC26.57■■□□□ 1.84
Upf3bQ3ULL6 Gm45855-201ENSMUST00000212546 880 ntBASIC26.56■■□□□ 1.84
Upf3bQ3ULL6 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Upf3bQ3ULL6 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC26.54■■□□□ 1.84
Upf3bQ3ULL6 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Upf3bQ3ULL6 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Upf3bQ3ULL6 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Upf3bQ3ULL6 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC26.52■■□□□ 1.84
Upf3bQ3ULL6 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Upf3bQ3ULL6 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Upf3bQ3ULL6 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
Upf3bQ3ULL6 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Upf3bQ3ULL6 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Upf3bQ3ULL6 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Upf3bQ3ULL6 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Upf3bQ3ULL6 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC26.46■■□□□ 1.83
Upf3bQ3ULL6 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
Upf3bQ3ULL6 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
Upf3bQ3ULL6 Gm24970-201ENSMUST00000175582 82 ntBASIC26.44■■□□□ 1.82
Upf3bQ3ULL6 Gm43863-201ENSMUST00000203822 1192 ntBASIC26.44■■□□□ 1.82
Upf3bQ3ULL6 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Upf3bQ3ULL6 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC26.43■■□□□ 1.82
Upf3bQ3ULL6 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC26.43■■□□□ 1.82
Upf3bQ3ULL6 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Upf3bQ3ULL6 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.42■■□□□ 1.82
Upf3bQ3ULL6 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
Upf3bQ3ULL6 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC26.42■■□□□ 1.82
Upf3bQ3ULL6 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
Upf3bQ3ULL6 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Upf3bQ3ULL6 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Upf3bQ3ULL6 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Upf3bQ3ULL6 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Upf3bQ3ULL6 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Upf3bQ3ULL6 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Upf3bQ3ULL6 Gm6206-201ENSMUST00000133472 2199 ntBASIC26.39■■□□□ 1.81
Upf3bQ3ULL6 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC26.38■■□□□ 1.81
Upf3bQ3ULL6 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Upf3bQ3ULL6 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC26.38■■□□□ 1.81
Upf3bQ3ULL6 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Upf3bQ3ULL6 Gm9905-201ENSMUST00000065740 1845 ntBASIC26.37■■□□□ 1.81
Upf3bQ3ULL6 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
Upf3bQ3ULL6 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
Upf3bQ3ULL6 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Upf3bQ3ULL6 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
Upf3bQ3ULL6 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Upf3bQ3ULL6 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Upf3bQ3ULL6 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC26.33■■□□□ 1.81
Upf3bQ3ULL6 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC26.33■■□□□ 1.8
Upf3bQ3ULL6 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Upf3bQ3ULL6 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC26.32■■□□□ 1.8
Upf3bQ3ULL6 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC26.32■■□□□ 1.8
Upf3bQ3ULL6 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC26.31■■□□□ 1.8
Upf3bQ3ULL6 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC26.31■■□□□ 1.8
Upf3bQ3ULL6 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Upf3bQ3ULL6 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Upf3bQ3ULL6 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Upf3bQ3ULL6 AC157572.2-201ENSMUST00000226970 908 ntBASIC26.3■■□□□ 1.8
Upf3bQ3ULL6 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC26.29■■□□□ 1.8
Upf3bQ3ULL6 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC26.29■■□□□ 1.8
Upf3bQ3ULL6 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Upf3bQ3ULL6 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Upf3bQ3ULL6 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Upf3bQ3ULL6 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Upf3bQ3ULL6 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Upf3bQ3ULL6 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Upf3bQ3ULL6 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC26.26■■□□□ 1.79
Upf3bQ3ULL6 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Upf3bQ3ULL6 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Upf3bQ3ULL6 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Upf3bQ3ULL6 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC26.21■■□□□ 1.79
Upf3bQ3ULL6 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
Upf3bQ3ULL6 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Upf3bQ3ULL6 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
Upf3bQ3ULL6 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
Upf3bQ3ULL6 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Upf3bQ3ULL6 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Upf3bQ3ULL6 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC26.19■■□□□ 1.78
Upf3bQ3ULL6 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Upf3bQ3ULL6 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Upf3bQ3ULL6 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
Upf3bQ3ULL6 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Upf3bQ3ULL6 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC26.16■■□□□ 1.78
Upf3bQ3ULL6 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Upf3bQ3ULL6 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Upf3bQ3ULL6 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Upf3bQ3ULL6 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Upf3bQ3ULL6 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
Upf3bQ3ULL6 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.77
Upf3bQ3ULL6 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Upf3bQ3ULL6 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Upf3bQ3ULL6 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC26.12■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 76.1 ms