Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
Chd3B1AR17 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Chd3B1AR17 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
Chd3B1AR17 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
Chd3B1AR17 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
Chd3B1AR17 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
Chd3B1AR17 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
Chd3B1AR17 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC24.8■■□□□ 1.56
Chd3B1AR17 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Chd3B1AR17 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Chd3B1AR17 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Chd3B1AR17 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Chd3B1AR17 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Chd3B1AR17 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Chd3B1AR17 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Chd3B1AR17 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Chd3B1AR17 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Chd3B1AR17 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Chd3B1AR17 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Chd3B1AR17 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
Chd3B1AR17 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
Chd3B1AR17 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
Chd3B1AR17 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Chd3B1AR17 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Chd3B1AR17 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Chd3B1AR17 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC24.68■■□□□ 1.54
Chd3B1AR17 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
Chd3B1AR17 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC24.67■■□□□ 1.54
Chd3B1AR17 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
Chd3B1AR17 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Chd3B1AR17 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Chd3B1AR17 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Chd3B1AR17 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Chd3B1AR17 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Chd3B1AR17 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC24.65■■□□□ 1.54
Chd3B1AR17 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Chd3B1AR17 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Chd3B1AR17 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC24.64■■□□□ 1.54
Chd3B1AR17 Gm42809-201ENSMUST00000198429 1138 ntBASIC24.64■■□□□ 1.53
Chd3B1AR17 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.53
Chd3B1AR17 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
Chd3B1AR17 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Chd3B1AR17 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Chd3B1AR17 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
Chd3B1AR17 Gm9939-201ENSMUST00000067161 1154 ntBASIC24.62■■□□□ 1.53
Chd3B1AR17 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Chd3B1AR17 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
Chd3B1AR17 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
Chd3B1AR17 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Chd3B1AR17 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Chd3B1AR17 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Chd3B1AR17 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
Chd3B1AR17 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Chd3B1AR17 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Chd3B1AR17 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Chd3B1AR17 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC24.56■■□□□ 1.52
Chd3B1AR17 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
Chd3B1AR17 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Chd3B1AR17 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC24.53■■□□□ 1.52
Chd3B1AR17 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Chd3B1AR17 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Chd3B1AR17 Gm8503-201ENSMUST00000118131 455 ntBASIC24.52■■□□□ 1.52
Chd3B1AR17 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Chd3B1AR17 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chd3B1AR17 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Chd3B1AR17 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC24.5■■□□□ 1.51
Chd3B1AR17 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Chd3B1AR17 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC24.5■■□□□ 1.51
Chd3B1AR17 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Chd3B1AR17 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Chd3B1AR17 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC24.49■■□□□ 1.51
Chd3B1AR17 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Chd3B1AR17 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Chd3B1AR17 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Chd3B1AR17 Gm6345-201ENSMUST00000180378 1691 ntBASIC24.47■■□□□ 1.51
Chd3B1AR17 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Chd3B1AR17 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Chd3B1AR17 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Chd3B1AR17 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC24.45■■□□□ 1.5
Chd3B1AR17 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Chd3B1AR17 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC24.43■■□□□ 1.5
Chd3B1AR17 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC24.43■■□□□ 1.5
Chd3B1AR17 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Chd3B1AR17 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
Chd3B1AR17 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
Chd3B1AR17 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Chd3B1AR17 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Chd3B1AR17 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Chd3B1AR17 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC24.4■■□□□ 1.5
Chd3B1AR17 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Chd3B1AR17 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
Chd3B1AR17 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC24.36■■□□□ 1.49
Chd3B1AR17 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Chd3B1AR17 Gm6821-201ENSMUST00000107540 542 ntBASIC24.35■■□□□ 1.49
Chd3B1AR17 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Chd3B1AR17 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Chd3B1AR17 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
Chd3B1AR17 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC24.32■■□□□ 1.48
Chd3B1AR17 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Chd3B1AR17 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC24.31■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms