Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC21.28■■□□□ 1
Chd6A3KFM7 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Chd6A3KFM7 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chd6A3KFM7 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Chd6A3KFM7 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
Chd6A3KFM7 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chd6A3KFM7 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Chd6A3KFM7 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chd6A3KFM7 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Chd6A3KFM7 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC21.22■□□□□ 0.99
Chd6A3KFM7 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC21.22■□□□□ 0.99
Chd6A3KFM7 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chd6A3KFM7 AC157572.2-201ENSMUST00000226970 908 ntBASIC21.21■□□□□ 0.99
Chd6A3KFM7 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Chd6A3KFM7 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Chd6A3KFM7 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Chd6A3KFM7 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.2■□□□□ 0.98
Chd6A3KFM7 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Chd6A3KFM7 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Chd6A3KFM7 Gm5297-201ENSMUST00000198555 1171 ntBASIC21.18■□□□□ 0.98
Chd6A3KFM7 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chd6A3KFM7 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chd6A3KFM7 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Chd6A3KFM7 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chd6A3KFM7 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chd6A3KFM7 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Chd6A3KFM7 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC21.12■□□□□ 0.97
Chd6A3KFM7 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Chd6A3KFM7 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Chd6A3KFM7 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Chd6A3KFM7 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Chd6A3KFM7 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chd6A3KFM7 Gm6311-201ENSMUST00000073790 878 ntBASIC21.08■□□□□ 0.97
Chd6A3KFM7 Gm5812-201ENSMUST00000061073 957 ntBASIC21.08■□□□□ 0.96
Chd6A3KFM7 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Chd6A3KFM7 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Chd6A3KFM7 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Chd6A3KFM7 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC21.06■□□□□ 0.96
Chd6A3KFM7 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chd6A3KFM7 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chd6A3KFM7 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Chd6A3KFM7 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21■□□□□ 0.95
Chd6A3KFM7 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC20.99■□□□□ 0.95
Chd6A3KFM7 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Chd6A3KFM7 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Chd6A3KFM7 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Chd6A3KFM7 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC20.98■□□□□ 0.95
Chd6A3KFM7 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC20.97■□□□□ 0.95
Chd6A3KFM7 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Chd6A3KFM7 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chd6A3KFM7 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Chd6A3KFM7 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Chd6A3KFM7 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chd6A3KFM7 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.96■□□□□ 0.95
Chd6A3KFM7 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Chd6A3KFM7 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC20.95■□□□□ 0.94
Chd6A3KFM7 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Chd6A3KFM7 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.93■□□□□ 0.94
Chd6A3KFM7 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Chd6A3KFM7 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.93■□□□□ 0.94
Chd6A3KFM7 Gm12366-201ENSMUST00000121722 873 ntBASIC20.93■□□□□ 0.94
Chd6A3KFM7 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.93■□□□□ 0.94
Chd6A3KFM7 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.93■□□□□ 0.94
Chd6A3KFM7 Gm5786-201ENSMUST00000085368 882 ntBASIC20.93■□□□□ 0.94
Chd6A3KFM7 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Chd6A3KFM7 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
Chd6A3KFM7 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Chd6A3KFM7 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.9■□□□□ 0.94
Chd6A3KFM7 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Chd6A3KFM7 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Chd6A3KFM7 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Chd6A3KFM7 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Chd6A3KFM7 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.89■□□□□ 0.93
Chd6A3KFM7 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Chd6A3KFM7 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Chd6A3KFM7 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
Chd6A3KFM7 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Chd6A3KFM7 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chd6A3KFM7 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Chd6A3KFM7 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Chd6A3KFM7 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Chd6A3KFM7 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC20.85■□□□□ 0.93
Chd6A3KFM7 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.84■□□□□ 0.93
Chd6A3KFM7 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chd6A3KFM7 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
Chd6A3KFM7 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Chd6A3KFM7 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
Chd6A3KFM7 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Chd6A3KFM7 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.81■□□□□ 0.92
Chd6A3KFM7 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Chd6A3KFM7 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Chd6A3KFM7 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.81■□□□□ 0.92
Chd6A3KFM7 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Chd6A3KFM7 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Chd6A3KFM7 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
Chd6A3KFM7 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC20.78■□□□□ 0.92
Chd6A3KFM7 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Chd6A3KFM7 Serp2-204ENSMUST00000228055 705 ntBASIC20.78■□□□□ 0.92
Chd6A3KFM7 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Chd6A3KFM7 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 10.3 ms