Protein–RNA interactions for Protein: A0A0B4J1P1

Trbv30, T cell receptor beta, variable 30 (Fragment), mousemouse

Predictions only

Length 111 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv30A0A0B4J1P1 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trbv30A0A0B4J1P1 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC18.6■□□□□ 0.57
Trbv30A0A0B4J1P1 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trbv30A0A0B4J1P1 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Trbv30A0A0B4J1P1 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trbv30A0A0B4J1P1 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trbv30A0A0B4J1P1 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trbv30A0A0B4J1P1 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trbv30A0A0B4J1P1 Gm45855-201ENSMUST00000212546 880 ntBASIC18.58■□□□□ 0.56
Trbv30A0A0B4J1P1 Gm9397-201ENSMUST00000200125 605 ntBASIC18.57■□□□□ 0.56
Trbv30A0A0B4J1P1 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trbv30A0A0B4J1P1 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv30A0A0B4J1P1 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trbv30A0A0B4J1P1 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv30A0A0B4J1P1 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC18.55■□□□□ 0.56
Trbv30A0A0B4J1P1 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trbv30A0A0B4J1P1 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv30A0A0B4J1P1 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv30A0A0B4J1P1 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Trbv30A0A0B4J1P1 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv30A0A0B4J1P1 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv30A0A0B4J1P1 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv30A0A0B4J1P1 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC18.52■□□□□ 0.56
Trbv30A0A0B4J1P1 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trbv30A0A0B4J1P1 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC18.51■□□□□ 0.55
Trbv30A0A0B4J1P1 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Trbv30A0A0B4J1P1 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv30A0A0B4J1P1 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv30A0A0B4J1P1 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv30A0A0B4J1P1 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv30A0A0B4J1P1 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv30A0A0B4J1P1 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv30A0A0B4J1P1 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Trbv30A0A0B4J1P1 Gm24970-201ENSMUST00000175582 82 ntBASIC18.48■□□□□ 0.55
Trbv30A0A0B4J1P1 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC18.48■□□□□ 0.55
Trbv30A0A0B4J1P1 Zxda-201ENSMUST00000117281 2621 ntBASIC18.48■□□□□ 0.55
Trbv30A0A0B4J1P1 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trbv30A0A0B4J1P1 Gm43863-201ENSMUST00000203822 1192 ntBASIC18.47■□□□□ 0.55
Trbv30A0A0B4J1P1 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv30A0A0B4J1P1 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv30A0A0B4J1P1 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv30A0A0B4J1P1 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
Trbv30A0A0B4J1P1 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC18.45■□□□□ 0.54
Trbv30A0A0B4J1P1 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv30A0A0B4J1P1 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv30A0A0B4J1P1 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC18.44■□□□□ 0.54
Trbv30A0A0B4J1P1 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv30A0A0B4J1P1 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv30A0A0B4J1P1 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv30A0A0B4J1P1 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC18.42■□□□□ 0.54
Trbv30A0A0B4J1P1 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv30A0A0B4J1P1 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv30A0A0B4J1P1 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv30A0A0B4J1P1 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
Trbv30A0A0B4J1P1 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Trbv30A0A0B4J1P1 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv30A0A0B4J1P1 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv30A0A0B4J1P1 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC18.38■□□□□ 0.53
Trbv30A0A0B4J1P1 AC157572.2-201ENSMUST00000226970 908 ntBASIC18.38■□□□□ 0.53
Trbv30A0A0B4J1P1 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
Trbv30A0A0B4J1P1 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv30A0A0B4J1P1 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv30A0A0B4J1P1 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv30A0A0B4J1P1 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv30A0A0B4J1P1 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv30A0A0B4J1P1 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv30A0A0B4J1P1 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC18.35■□□□□ 0.53
Trbv30A0A0B4J1P1 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv30A0A0B4J1P1 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv30A0A0B4J1P1 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv30A0A0B4J1P1 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC18.34■□□□□ 0.53
Trbv30A0A0B4J1P1 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv30A0A0B4J1P1 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv30A0A0B4J1P1 Gm9905-201ENSMUST00000065740 1845 ntBASIC18.34■□□□□ 0.53
Trbv30A0A0B4J1P1 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv30A0A0B4J1P1 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trbv30A0A0B4J1P1 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC18.33■□□□□ 0.52
Trbv30A0A0B4J1P1 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv30A0A0B4J1P1 Gm43445-201ENSMUST00000198564 2091 ntBASIC18.33■□□□□ 0.52
Trbv30A0A0B4J1P1 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Trbv30A0A0B4J1P1 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC18.32■□□□□ 0.52
Trbv30A0A0B4J1P1 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.32■□□□□ 0.52
Trbv30A0A0B4J1P1 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv30A0A0B4J1P1 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv30A0A0B4J1P1 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Trbv30A0A0B4J1P1 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv30A0A0B4J1P1 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv30A0A0B4J1P1 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC18.3■□□□□ 0.52
Trbv30A0A0B4J1P1 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv30A0A0B4J1P1 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC18.29■□□□□ 0.52
Trbv30A0A0B4J1P1 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv30A0A0B4J1P1 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv30A0A0B4J1P1 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv30A0A0B4J1P1 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC18.28■□□□□ 0.52
Trbv30A0A0B4J1P1 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv30A0A0B4J1P1 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Trbv30A0A0B4J1P1 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv30A0A0B4J1P1 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.27■□□□□ 0.51
Trbv30A0A0B4J1P1 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trbv30A0A0B4J1P1 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 10 ms