Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clrn1Q8K445 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clrn1Q8K445 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Clrn1Q8K445 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clrn1Q8K445 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Gm10655-201ENSMUST00000098658 1397 ntBASIC17.44■□□□□ 0.38
Clrn1Q8K445 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clrn1Q8K445 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Clrn1Q8K445 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Clrn1Q8K445 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Clrn1Q8K445 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Clrn1Q8K445 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Clrn1Q8K445 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Clrn1Q8K445 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Clrn1Q8K445 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
Clrn1Q8K445 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Clrn1Q8K445 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.42■□□□□ 0.38
Clrn1Q8K445 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Clrn1Q8K445 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC17.42■□□□□ 0.38
Clrn1Q8K445 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
Clrn1Q8K445 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Clrn1Q8K445 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Gm10849-201ENSMUST00000100397 618 ntBASIC17.41■□□□□ 0.38
Clrn1Q8K445 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Gm15853-202ENSMUST00000195518 2041 ntBASIC17.41■□□□□ 0.38
Clrn1Q8K445 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Clrn1Q8K445 AC131586.2-201ENSMUST00000228370 1512 ntBASIC17.41■□□□□ 0.38
Clrn1Q8K445 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Clrn1Q8K445 Gm6627-201ENSMUST00000218299 2386 ntBASIC17.4■□□□□ 0.38
Clrn1Q8K445 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Clrn1Q8K445 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms