Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm43231-201ENSMUST00000202960 2258 ntBASIC16.7■□□□□ 0.26
Lmx1bO88609 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
Lmx1bO88609 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC16.7■□□□□ 0.26
Lmx1bO88609 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Lmx1bO88609 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Lmx1bO88609 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Lmx1bO88609 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Lmx1bO88609 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Lmx1bO88609 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Lmx1bO88609 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Lmx1bO88609 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Lmx1bO88609 Gm37856-201ENSMUST00000191634 999 ntBASIC16.69■□□□□ 0.26
Lmx1bO88609 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Lmx1bO88609 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Lmx1bO88609 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Lmx1bO88609 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Lmx1bO88609 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Lmx1bO88609 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Lmx1bO88609 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Lmx1bO88609 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Lmx1bO88609 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Lmx1bO88609 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Lmx1bO88609 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
Lmx1bO88609 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC16.68■□□□□ 0.26
Lmx1bO88609 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Lmx1bO88609 AC135637.1-201ENSMUST00000227750 365 ntBASIC16.68■□□□□ 0.26
Lmx1bO88609 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Lmx1bO88609 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Lmx1bO88609 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Lmx1bO88609 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Lmx1bO88609 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Lmx1bO88609 Gm5540-201ENSMUST00000131852 1848 ntBASIC16.68■□□□□ 0.26
Lmx1bO88609 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Lmx1bO88609 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Lmx1bO88609 Rncr4-201ENSMUST00000194541 2234 ntBASIC16.68■□□□□ 0.26
Lmx1bO88609 Gm10167-201ENSMUST00000150411 1479 ntBASIC16.67■□□□□ 0.26
Lmx1bO88609 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lmx1bO88609 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Lmx1bO88609 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lmx1bO88609 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Lmx1bO88609 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC16.67■□□□□ 0.26
Lmx1bO88609 Gm22240-201ENSMUST00000175225 82 ntBASIC16.67■□□□□ 0.26
Lmx1bO88609 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Lmx1bO88609 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lmx1bO88609 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC16.67■□□□□ 0.26
Lmx1bO88609 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lmx1bO88609 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lmx1bO88609 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Lmx1bO88609 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lmx1bO88609 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lmx1bO88609 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lmx1bO88609 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Lmx1bO88609 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lmx1bO88609 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lmx1bO88609 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lmx1bO88609 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lmx1bO88609 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lmx1bO88609 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lmx1bO88609 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Lmx1bO88609 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC16.66■□□□□ 0.26
Lmx1bO88609 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Lmx1bO88609 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Lmx1bO88609 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC16.66■□□□□ 0.26
Lmx1bO88609 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lmx1bO88609 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Lmx1bO88609 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lmx1bO88609 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Lmx1bO88609 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Lmx1bO88609 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Lmx1bO88609 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Lmx1bO88609 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lmx1bO88609 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Lmx1bO88609 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lmx1bO88609 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lmx1bO88609 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Lmx1bO88609 Gm19094-201ENSMUST00000209791 1246 ntBASIC16.65■□□□□ 0.26
Lmx1bO88609 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lmx1bO88609 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lmx1bO88609 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lmx1bO88609 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lmx1bO88609 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lmx1bO88609 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Lmx1bO88609 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Lmx1bO88609 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Lmx1bO88609 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lmx1bO88609 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lmx1bO88609 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lmx1bO88609 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC16.64■□□□□ 0.25
Lmx1bO88609 Gm13168-201ENSMUST00000121771 632 ntBASIC16.64■□□□□ 0.25
Lmx1bO88609 Trmt13-210ENSMUST00000198454 880 ntBASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms