Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Prpf40aQ9R1C7 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Gm10849-201ENSMUST00000100397 618 ntBASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Prpf40aQ9R1C7 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Prpf40aQ9R1C7 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Prpf40aQ9R1C7 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Prpf40aQ9R1C7 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Prpf40aQ9R1C7 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Prpf40aQ9R1C7 Gm13534-201ENSMUST00000121169 513 ntBASIC20.34■□□□□ 0.85
Prpf40aQ9R1C7 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Prpf40aQ9R1C7 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Prpf40aQ9R1C7 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Prpf40aQ9R1C7 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Prpf40aQ9R1C7 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.34■□□□□ 0.85
Prpf40aQ9R1C7 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Prpf40aQ9R1C7 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Prpf40aQ9R1C7 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Prpf40aQ9R1C7 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Prpf40aQ9R1C7 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Prpf40aQ9R1C7 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Prpf40aQ9R1C7 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Prpf40aQ9R1C7 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Prpf40aQ9R1C7 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC20.33■□□□□ 0.84
Prpf40aQ9R1C7 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Prpf40aQ9R1C7 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Prpf40aQ9R1C7 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Prpf40aQ9R1C7 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Prpf40aQ9R1C7 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Prpf40aQ9R1C7 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Prpf40aQ9R1C7 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.32■□□□□ 0.84
Prpf40aQ9R1C7 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Prpf40aQ9R1C7 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Prpf40aQ9R1C7 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Prpf40aQ9R1C7 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Prpf40aQ9R1C7 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Prpf40aQ9R1C7 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Prpf40aQ9R1C7 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Prpf40aQ9R1C7 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC20.31■□□□□ 0.84
Prpf40aQ9R1C7 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Prpf40aQ9R1C7 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Prpf40aQ9R1C7 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Prpf40aQ9R1C7 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Prpf40aQ9R1C7 Gm42569-201ENSMUST00000200539 472 ntBASIC20.31■□□□□ 0.84
Prpf40aQ9R1C7 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.31■□□□□ 0.84
Prpf40aQ9R1C7 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Prpf40aQ9R1C7 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Prpf40aQ9R1C7 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Prpf40aQ9R1C7 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Prpf40aQ9R1C7 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Gm26571-201ENSMUST00000181399 666 ntBASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Prpf40aQ9R1C7 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Prpf40aQ9R1C7 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms