Protein–RNA interactions for Protein: Q9JJV9

Scn5a, Sodium channel protein type 5 subunit alpha, mousemouse

Predictions only

Length 2,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn5aQ9JJV9 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Scn5aQ9JJV9 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn5aQ9JJV9 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn5aQ9JJV9 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
Scn5aQ9JJV9 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Scn5aQ9JJV9 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.27■□□□□ 0.67
Scn5aQ9JJV9 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn5aQ9JJV9 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn5aQ9JJV9 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Scn5aQ9JJV9 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Scn5aQ9JJV9 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Scn5aQ9JJV9 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn5aQ9JJV9 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC19.26■□□□□ 0.67
Scn5aQ9JJV9 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn5aQ9JJV9 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn5aQ9JJV9 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn5aQ9JJV9 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn5aQ9JJV9 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Scn5aQ9JJV9 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Gm12382-201ENSMUST00000122005 922 ntBASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Gm42545-201ENSMUST00000202755 922 ntBASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Gm21814-202ENSMUST00000203277 873 ntBASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Gm43183-201ENSMUST00000200632 547 ntBASIC19.24■□□□□ 0.67
Scn5aQ9JJV9 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn5aQ9JJV9 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.22■□□□□ 0.67
Scn5aQ9JJV9 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn5aQ9JJV9 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scn5aQ9JJV9 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scn5aQ9JJV9 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Scn5aQ9JJV9 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Scn5aQ9JJV9 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn5aQ9JJV9 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn5aQ9JJV9 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.22■□□□□ 0.67
Scn5aQ9JJV9 Gm15375-201ENSMUST00000119510 849 ntBASIC19.22■□□□□ 0.67
Scn5aQ9JJV9 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC19.22■□□□□ 0.67
Scn5aQ9JJV9 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scn5aQ9JJV9 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scn5aQ9JJV9 Gm3375-201ENSMUST00000203929 796 ntBASIC19.21■□□□□ 0.67
Scn5aQ9JJV9 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC19.21■□□□□ 0.67
Scn5aQ9JJV9 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Scn5aQ9JJV9 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scn5aQ9JJV9 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn5aQ9JJV9 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn5aQ9JJV9 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Scn5aQ9JJV9 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Scn5aQ9JJV9 Gm7889-201ENSMUST00000185591 958 ntBASIC19.2■□□□□ 0.66
Scn5aQ9JJV9 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn5aQ9JJV9 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn5aQ9JJV9 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn5aQ9JJV9 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn5aQ9JJV9 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.2■□□□□ 0.66
Scn5aQ9JJV9 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Scn5aQ9JJV9 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn5aQ9JJV9 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn5aQ9JJV9 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn5aQ9JJV9 Gm18688-201ENSMUST00000204695 1859 ntBASIC19.19■□□□□ 0.66
Scn5aQ9JJV9 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms