Protein–RNA interactions for Protein: P35582

Foxa1, Hepatocyte nuclear factor 3-alpha, mousemouse

Predictions only

Length 468 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxa1P35582 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Foxa1P35582 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Foxa1P35582 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Foxa1P35582 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Foxa1P35582 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Foxa1P35582 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Foxa1P35582 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Foxa1P35582 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Foxa1P35582 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.15■□□□□ 0.34
Foxa1P35582 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Foxa1P35582 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Foxa1P35582 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Foxa1P35582 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Foxa1P35582 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Foxa1P35582 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Foxa1P35582 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Foxa1P35582 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Foxa1P35582 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC17.14■□□□□ 0.33
Foxa1P35582 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Foxa1P35582 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Foxa1P35582 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Foxa1P35582 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
Foxa1P35582 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Foxa1P35582 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC17.14■□□□□ 0.33
Foxa1P35582 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Foxa1P35582 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Foxa1P35582 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Foxa1P35582 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Foxa1P35582 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Foxa1P35582 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Foxa1P35582 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Foxa1P35582 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC17.13■□□□□ 0.33
Foxa1P35582 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Foxa1P35582 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Foxa1P35582 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Foxa1P35582 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC17.13■□□□□ 0.33
Foxa1P35582 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.13■□□□□ 0.33
Foxa1P35582 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.13■□□□□ 0.33
Foxa1P35582 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Foxa1P35582 Gm6365-201ENSMUST00000054711 744 ntBASIC17.13■□□□□ 0.33
Foxa1P35582 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Foxa1P35582 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Foxa1P35582 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Foxa1P35582 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Foxa1P35582 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Foxa1P35582 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Foxa1P35582 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Foxa1P35582 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17.12■□□□□ 0.33
Foxa1P35582 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC17.12■□□□□ 0.33
Foxa1P35582 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC17.12■□□□□ 0.33
Foxa1P35582 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Foxa1P35582 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Foxa1P35582 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Foxa1P35582 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Foxa1P35582 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Foxa1P35582 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Foxa1P35582 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Foxa1P35582 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC17.1■□□□□ 0.33
Foxa1P35582 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC17.1■□□□□ 0.33
Foxa1P35582 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Foxa1P35582 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Foxa1P35582 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Foxa1P35582 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Foxa1P35582 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Foxa1P35582 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Foxa1P35582 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Foxa1P35582 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Foxa1P35582 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Foxa1P35582 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.09■□□□□ 0.33
Foxa1P35582 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.09■□□□□ 0.33
Foxa1P35582 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Foxa1P35582 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms