Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Msx1P13297 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Msx1P13297 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Msx1P13297 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC17.53■□□□□ 0.4
Msx1P13297 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Msx1P13297 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Msx1P13297 Gm7860-201ENSMUST00000121190 879 ntBASIC17.53■□□□□ 0.4
Msx1P13297 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC17.53■□□□□ 0.4
Msx1P13297 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.53■□□□□ 0.4
Msx1P13297 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.53■□□□□ 0.4
Msx1P13297 Gm29241-201ENSMUST00000189260 1096 ntBASIC17.53■□□□□ 0.4
Msx1P13297 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Msx1P13297 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Msx1P13297 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Msx1P13297 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
Msx1P13297 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Msx1P13297 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
Msx1P13297 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Msx1P13297 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Msx1P13297 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Msx1P13297 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Msx1P13297 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Msx1P13297 Gm26524-201ENSMUST00000192339 390 ntBASIC17.52■□□□□ 0.4
Msx1P13297 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC17.52■□□□□ 0.4
Msx1P13297 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Msx1P13297 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.52■□□□□ 0.4
Msx1P13297 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Msx1P13297 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Msx1P13297 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Msx1P13297 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.52■□□□□ 0.39
Msx1P13297 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
Msx1P13297 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Msx1P13297 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Msx1P13297 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Msx1P13297 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Msx1P13297 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Msx1P13297 Gm44672-201ENSMUST00000206944 1098 ntBASIC17.51■□□□□ 0.39
Msx1P13297 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Msx1P13297 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Msx1P13297 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Msx1P13297 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Msx1P13297 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Msx1P13297 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Msx1P13297 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Msx1P13297 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Msx1P13297 Gm13836-201ENSMUST00000121159 501 ntBASIC17.5■□□□□ 0.39
Msx1P13297 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Msx1P13297 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Msx1P13297 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Msx1P13297 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Msx1P13297 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.5■□□□□ 0.39
Msx1P13297 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Msx1P13297 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Msx1P13297 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
Msx1P13297 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Msx1P13297 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Msx1P13297 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 Gm42790-201ENSMUST00000201268 969 ntBASIC17.49■□□□□ 0.39
Msx1P13297 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.49■□□□□ 0.39
Msx1P13297 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC17.49■□□□□ 0.39
Msx1P13297 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Msx1P13297 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Msx1P13297 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Msx1P13297 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Msx1P13297 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Msx1P13297 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Msx1P13297 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Msx1P13297 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Msx1P13297 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Msx1P13297 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC17.48■□□□□ 0.39
Msx1P13297 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Msx1P13297 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Msx1P13297 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC17.48■□□□□ 0.39
Msx1P13297 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Msx1P13297 Rab3c-203ENSMUST00000224180 967 ntBASIC17.48■□□□□ 0.39
Msx1P13297 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Msx1P13297 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.48■□□□□ 0.39
Msx1P13297 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Msx1P13297 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Msx1P13297 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
Msx1P13297 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms