Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC14.38□□□□□ -0.11
Hoxd3P09027 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hoxd3P09027 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hoxd3P09027 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hoxd3P09027 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hoxd3P09027 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Hoxd3P09027 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hoxd3P09027 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC14.37□□□□□ -0.11
Hoxd3P09027 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Hoxd3P09027 Rab3c-203ENSMUST00000224180 967 ntBASIC14.37□□□□□ -0.11
Hoxd3P09027 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hoxd3P09027 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Hoxd3P09027 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hoxd3P09027 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Hoxd3P09027 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Hoxd3P09027 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hoxd3P09027 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC14.37□□□□□ -0.11
Hoxd3P09027 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Hoxd3P09027 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Hoxd3P09027 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC14.36□□□□□ -0.11
Hoxd3P09027 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC14.36□□□□□ -0.11
Hoxd3P09027 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Gm44672-201ENSMUST00000206944 1098 ntBASIC14.36□□□□□ -0.11
Hoxd3P09027 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hoxd3P09027 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Hoxd3P09027 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Hoxd3P09027 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hoxd3P09027 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC14.35□□□□□ -0.11
Hoxd3P09027 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC14.35□□□□□ -0.11
Hoxd3P09027 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC14.35□□□□□ -0.11
Hoxd3P09027 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Hoxd3P09027 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hoxd3P09027 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hoxd3P09027 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
Hoxd3P09027 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hoxd3P09027 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC14.34□□□□□ -0.11
Hoxd3P09027 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Hoxd3P09027 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
Hoxd3P09027 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC14.34□□□□□ -0.11
Hoxd3P09027 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC14.34□□□□□ -0.11
Hoxd3P09027 Gm10653-202ENSMUST00000139570 835 ntBASIC14.34□□□□□ -0.11
Hoxd3P09027 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC14.34□□□□□ -0.11
Hoxd3P09027 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC14.34□□□□□ -0.11
Hoxd3P09027 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC14.34□□□□□ -0.11
Hoxd3P09027 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Hoxd3P09027 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hoxd3P09027 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Hoxd3P09027 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC14.33□□□□□ -0.11
Hoxd3P09027 Gm10167-201ENSMUST00000150411 1479 ntBASIC14.33□□□□□ -0.12
Hoxd3P09027 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC14.33□□□□□ -0.12
Hoxd3P09027 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hoxd3P09027 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hoxd3P09027 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Hoxd3P09027 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hoxd3P09027 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Hoxd3P09027 AC160393.1-201ENSMUST00000218378 1279 ntBASIC14.33□□□□□ -0.12
Hoxd3P09027 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hoxd3P09027 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hoxd3P09027 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Hoxd3P09027 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC14.33□□□□□ -0.12
Hoxd3P09027 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hoxd3P09027 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hoxd3P09027 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hoxd3P09027 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hoxd3P09027 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Hoxd3P09027 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hoxd3P09027 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
Hoxd3P09027 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Hoxd3P09027 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Hoxd3P09027 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms