Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim39Q9ESN2 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.31■□□□□ 0.36
Trim39Q9ESN2 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC17.31■□□□□ 0.36
Trim39Q9ESN2 Gm26833-201ENSMUST00000180899 440 ntBASIC17.31■□□□□ 0.36
Trim39Q9ESN2 Gm40848-201ENSMUST00000221998 324 ntBASIC17.31■□□□□ 0.36
Trim39Q9ESN2 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC17.31■□□□□ 0.36
Trim39Q9ESN2 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim39Q9ESN2 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim39Q9ESN2 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.31■□□□□ 0.36
Trim39Q9ESN2 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim39Q9ESN2 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim39Q9ESN2 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim39Q9ESN2 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Gm5953-201ENSMUST00000220644 2616 ntBASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim39Q9ESN2 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Gm43231-201ENSMUST00000202960 2258 ntBASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim39Q9ESN2 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim39Q9ESN2 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim39Q9ESN2 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim39Q9ESN2 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim39Q9ESN2 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC17.27■□□□□ 0.36
Trim39Q9ESN2 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC17.27■□□□□ 0.36
Trim39Q9ESN2 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC17.27■□□□□ 0.36
Trim39Q9ESN2 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim39Q9ESN2 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim39Q9ESN2 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim39Q9ESN2 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim39Q9ESN2 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim39Q9ESN2 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms