Protein–RNA interactions for Protein: Q8CDN8

Ccdc38, Coiled-coil domain-containing protein 38, mousemouse

Predictions only

Length 563 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38Q8CDN8 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Ccdc38Q8CDN8 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC20.66■□□□□ 0.9
Ccdc38Q8CDN8 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.66■□□□□ 0.9
Ccdc38Q8CDN8 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.66■□□□□ 0.9
Ccdc38Q8CDN8 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc38Q8CDN8 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.66■□□□□ 0.9
Ccdc38Q8CDN8 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc38Q8CDN8 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc38Q8CDN8 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc38Q8CDN8 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Ccdc38Q8CDN8 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc38Q8CDN8 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc38Q8CDN8 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc38Q8CDN8 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Ccdc38Q8CDN8 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc38Q8CDN8 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.64■□□□□ 0.9
Ccdc38Q8CDN8 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc38Q8CDN8 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc38Q8CDN8 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc38Q8CDN8 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Ccdc38Q8CDN8 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
Ccdc38Q8CDN8 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.64■□□□□ 0.89
Ccdc38Q8CDN8 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc38Q8CDN8 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc38Q8CDN8 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc38Q8CDN8 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Ccdc38Q8CDN8 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc38Q8CDN8 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc38Q8CDN8 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc38Q8CDN8 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc38Q8CDN8 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc38Q8CDN8 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc38Q8CDN8 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc38Q8CDN8 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc38Q8CDN8 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc38Q8CDN8 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc38Q8CDN8 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc38Q8CDN8 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC20.62■□□□□ 0.89
Ccdc38Q8CDN8 Gm13146-201ENSMUST00000118508 780 ntBASIC20.62■□□□□ 0.89
Ccdc38Q8CDN8 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc38Q8CDN8 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc38Q8CDN8 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc38Q8CDN8 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc38Q8CDN8 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Ccdc38Q8CDN8 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ccdc38Q8CDN8 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Ccdc38Q8CDN8 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
Ccdc38Q8CDN8 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ccdc38Q8CDN8 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ccdc38Q8CDN8 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Dmtn-210ENSMUST00000228824 2377 ntBASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Ccdc38Q8CDN8 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.58■□□□□ 0.89
Ccdc38Q8CDN8 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.58■□□□□ 0.89
Ccdc38Q8CDN8 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ccdc38Q8CDN8 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
Ccdc38Q8CDN8 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.58■□□□□ 0.89
Ccdc38Q8CDN8 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Ccdc38Q8CDN8 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ccdc38Q8CDN8 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.58■□□□□ 0.89
Ccdc38Q8CDN8 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.58■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms