Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMS3P0CW19 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LIMS3P0CW19 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
LIMS3P0CW19 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMS3P0CW19 OR2I1P-207ENST00000453522 948 ntBASIC18.79■□□□□ 0.6
LIMS3P0CW19 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMS3P0CW19 AL034346.1-201ENST00000568244 1277 ntBASIC18.79■□□□□ 0.6
LIMS3P0CW19 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMS3P0CW19 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMS3P0CW19 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMS3P0CW19 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMS3P0CW19 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMS3P0CW19 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
LIMS3P0CW19 AC007952.6-201ENST00000573168 2673 ntBASIC18.78■□□□□ 0.6
LIMS3P0CW19 AC003957.1-201ENST00000625108 2673 ntBASIC18.78■□□□□ 0.6
LIMS3P0CW19 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
LIMS3P0CW19 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
LIMS3P0CW19 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
LIMS3P0CW19 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMS3P0CW19 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMS3P0CW19 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMS3P0CW19 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMS3P0CW19 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMS3P0CW19 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMS3P0CW19 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
LIMS3P0CW19 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMS3P0CW19 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMS3P0CW19 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
LIMS3P0CW19 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
LIMS3P0CW19 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMS3P0CW19 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMS3P0CW19 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMS3P0CW19 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMS3P0CW19 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMS3P0CW19 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMS3P0CW19 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMS3P0CW19 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMS3P0CW19 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMS3P0CW19 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMS3P0CW19 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.77■□□□□ 0.6
LIMS3P0CW19 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMS3P0CW19 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
LIMS3P0CW19 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
LIMS3P0CW19 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIMS3P0CW19 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.77■□□□□ 0.59
LIMS3P0CW19 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMS3P0CW19 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMS3P0CW19 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LIMS3P0CW19 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMS3P0CW19 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
LIMS3P0CW19 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMS3P0CW19 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
LIMS3P0CW19 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMS3P0CW19 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMS3P0CW19 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMS3P0CW19 AC239859.2-201ENST00000444165 318 ntBASIC18.76■□□□□ 0.59
LIMS3P0CW19 AC099791.2-201ENST00000605725 427 ntBASIC18.76■□□□□ 0.59
LIMS3P0CW19 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMS3P0CW19 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LIMS3P0CW19 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMS3P0CW19 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
LIMS3P0CW19 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMS3P0CW19 AP004607.7-201ENST00000527152 1677 ntBASIC18.76■□□□□ 0.59
LIMS3P0CW19 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMS3P0CW19 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
LIMS3P0CW19 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMS3P0CW19 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMS3P0CW19 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMS3P0CW19 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMS3P0CW19 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMS3P0CW19 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMS3P0CW19 AL391422.3-201ENST00000603791 2761 ntBASIC18.75■□□□□ 0.59
LIMS3P0CW19 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMS3P0CW19 MIR3181-201ENST00000578512 73 ntBASIC18.75■□□□□ 0.59
LIMS3P0CW19 MIR6724-1-201ENST00000616420 92 ntBASIC18.75■□□□□ 0.59
LIMS3P0CW19 MIR6724-2-201ENST00000616483 92 ntBASIC18.75■□□□□ 0.59
LIMS3P0CW19 MIR6724-4-201ENST00000617390 92 ntBASIC18.75■□□□□ 0.59
LIMS3P0CW19 MIR6724-3-201ENST00000622482 92 ntBASIC18.75■□□□□ 0.59
LIMS3P0CW19 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMS3P0CW19 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.75■□□□□ 0.59
LIMS3P0CW19 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMS3P0CW19 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMS3P0CW19 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
LIMS3P0CW19 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMS3P0CW19 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMS3P0CW19 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms