Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Mir7075-201ENSMUST00000184187 82 ntBASIC17.63■□□□□ 0.41
Use1Q9CQ56 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Smad6-203ENSMUST00000179458 273 ntBASIC17.62■□□□□ 0.41
Use1Q9CQ56 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Gm43034-201ENSMUST00000198678 1364 ntBASIC17.62■□□□□ 0.41
Use1Q9CQ56 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Use1Q9CQ56 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Use1Q9CQ56 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Wdr70-203ENSMUST00000227371 1130 ntBASIC17.61■□□□□ 0.41
Use1Q9CQ56 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Use1Q9CQ56 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Use1Q9CQ56 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Use1Q9CQ56 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Use1Q9CQ56 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Use1Q9CQ56 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Use1Q9CQ56 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Use1Q9CQ56 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Use1Q9CQ56 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Use1Q9CQ56 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Use1Q9CQ56 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC17.6■□□□□ 0.41
Use1Q9CQ56 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Use1Q9CQ56 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Use1Q9CQ56 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC17.59■□□□□ 0.41
Use1Q9CQ56 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Use1Q9CQ56 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Use1Q9CQ56 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Use1Q9CQ56 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Use1Q9CQ56 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Use1Q9CQ56 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Use1Q9CQ56 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Use1Q9CQ56 Gm21956-201ENSMUST00000179946 522 ntBASIC17.59■□□□□ 0.41
Use1Q9CQ56 Gm27801-201ENSMUST00000184174 223 ntBASIC17.59■□□□□ 0.41
Use1Q9CQ56 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC17.59■□□□□ 0.41
Use1Q9CQ56 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC17.59■□□□□ 0.41
Use1Q9CQ56 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.59■□□□□ 0.41
Use1Q9CQ56 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Use1Q9CQ56 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Use1Q9CQ56 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Use1Q9CQ56 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Gm7860-201ENSMUST00000121190 879 ntBASIC17.58■□□□□ 0.4
Use1Q9CQ56 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Gm8493-201ENSMUST00000196881 489 ntBASIC17.58■□□□□ 0.4
Use1Q9CQ56 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Use1Q9CQ56 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Use1Q9CQ56 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Use1Q9CQ56 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Use1Q9CQ56 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Use1Q9CQ56 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Use1Q9CQ56 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Use1Q9CQ56 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Use1Q9CQ56 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms