Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh4Q99MT2 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.14■□□□□ 0.5
Msh4Q99MT2 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh4Q99MT2 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
Msh4Q99MT2 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
Msh4Q99MT2 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh4Q99MT2 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh4Q99MT2 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC18.14■□□□□ 0.49
Msh4Q99MT2 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh4Q99MT2 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh4Q99MT2 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh4Q99MT2 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Msh4Q99MT2 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh4Q99MT2 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh4Q99MT2 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC18.13■□□□□ 0.49
Msh4Q99MT2 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh4Q99MT2 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Msh4Q99MT2 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.12■□□□□ 0.49
Msh4Q99MT2 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 Rncr4-201ENSMUST00000194541 2234 ntBASIC18.12■□□□□ 0.49
Msh4Q99MT2 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh4Q99MT2 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Msh4Q99MT2 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC18.11■□□□□ 0.49
Msh4Q99MT2 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Msh4Q99MT2 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Msh4Q99MT2 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Msh4Q99MT2 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Msh4Q99MT2 BC021767-201ENSMUST00000126387 1716 ntBASIC18.09■□□□□ 0.49
Msh4Q99MT2 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Msh4Q99MT2 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Msh4Q99MT2 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Msh4Q99MT2 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msh4Q99MT2 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.09■□□□□ 0.49
Msh4Q99MT2 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Msh4Q99MT2 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms