Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Vps53Q8CCB4 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vps53Q8CCB4 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Vps53Q8CCB4 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC21.68■■□□□ 1.06
Vps53Q8CCB4 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC21.68■■□□□ 1.06
Vps53Q8CCB4 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC21.68■■□□□ 1.06
Vps53Q8CCB4 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vps53Q8CCB4 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vps53Q8CCB4 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Vps53Q8CCB4 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Vps53Q8CCB4 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Vps53Q8CCB4 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Vps53Q8CCB4 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC21.68■■□□□ 1.06
Vps53Q8CCB4 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Mir5133-201ENSMUST00000174955 77 ntBASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.67■■□□□ 1.06
Vps53Q8CCB4 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vps53Q8CCB4 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Vps53Q8CCB4 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Vps53Q8CCB4 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Vps53Q8CCB4 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vps53Q8CCB4 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vps53Q8CCB4 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps53Q8CCB4 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Vps53Q8CCB4 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps53Q8CCB4 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC21.65■■□□□ 1.06
Vps53Q8CCB4 Nespas-201ENSMUST00000143738 1083 ntBASIC21.65■■□□□ 1.06
Vps53Q8CCB4 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps53Q8CCB4 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps53Q8CCB4 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps53Q8CCB4 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC21.65■■□□□ 1.06
Vps53Q8CCB4 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Vps53Q8CCB4 Gm37352-201ENSMUST00000193908 2181 ntBASIC21.64■■□□□ 1.06
Vps53Q8CCB4 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Vps53Q8CCB4 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Vps53Q8CCB4 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Vps53Q8CCB4 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Vps53Q8CCB4 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps53Q8CCB4 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps53Q8CCB4 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps53Q8CCB4 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps53Q8CCB4 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps53Q8CCB4 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps53Q8CCB4 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps53Q8CCB4 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps53Q8CCB4 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps53Q8CCB4 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps53Q8CCB4 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 AC126028.2-201ENSMUST00000228100 1833 ntBASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps53Q8CCB4 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.62■■□□□ 1.05
Vps53Q8CCB4 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps53Q8CCB4 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC21.62■■□□□ 1.05
Vps53Q8CCB4 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Vps53Q8CCB4 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps53Q8CCB4 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Vps53Q8CCB4 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Vps53Q8CCB4 Gm42555-201ENSMUST00000199304 1039 ntBASIC21.62■■□□□ 1.05
Vps53Q8CCB4 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC21.62■■□□□ 1.05
Vps53Q8CCB4 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Vps53Q8CCB4 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps53Q8CCB4 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps53Q8CCB4 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Vps53Q8CCB4 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC21.61■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms