Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC22.13■■□□□ 1.13
Trim56Q80VI1 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trim56Q80VI1 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trim56Q80VI1 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trim56Q80VI1 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Gm37563-201ENSMUST00000192580 1513 ntBASIC22.12■■□□□ 1.13
Trim56Q80VI1 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Gm43672-201ENSMUST00000199072 1731 ntBASIC22.12■■□□□ 1.13
Trim56Q80VI1 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trim56Q80VI1 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC22.12■■□□□ 1.13
Trim56Q80VI1 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Trim56Q80VI1 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Trim56Q80VI1 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Trim56Q80VI1 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Trim56Q80VI1 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Trim56Q80VI1 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Trim56Q80VI1 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
Trim56Q80VI1 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Trim56Q80VI1 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Trim56Q80VI1 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
Trim56Q80VI1 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC22.11■■□□□ 1.13
Trim56Q80VI1 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Trim56Q80VI1 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC22.1■■□□□ 1.13
Trim56Q80VI1 Gm9885-202ENSMUST00000186234 2209 ntBASIC22.1■■□□□ 1.13
Trim56Q80VI1 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC22.1■■□□□ 1.13
Trim56Q80VI1 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trim56Q80VI1 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC22.1■■□□□ 1.13
Trim56Q80VI1 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trim56Q80VI1 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trim56Q80VI1 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trim56Q80VI1 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trim56Q80VI1 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trim56Q80VI1 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trim56Q80VI1 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trim56Q80VI1 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trim56Q80VI1 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Trim56Q80VI1 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trim56Q80VI1 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trim56Q80VI1 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trim56Q80VI1 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trim56Q80VI1 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trim56Q80VI1 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trim56Q80VI1 Gm43859-201ENSMUST00000200075 1412 ntBASIC22.09■■□□□ 1.13
Trim56Q80VI1 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC22.09■■□□□ 1.13
Trim56Q80VI1 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Trim56Q80VI1 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trim56Q80VI1 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trim56Q80VI1 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trim56Q80VI1 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
Trim56Q80VI1 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Trim56Q80VI1 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Trim56Q80VI1 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Trim56Q80VI1 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Trim56Q80VI1 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
Trim56Q80VI1 Gm38342-201ENSMUST00000195710 2980 ntBASIC22.08■■□□□ 1.13
Trim56Q80VI1 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
Trim56Q80VI1 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Trim56Q80VI1 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
Trim56Q80VI1 Gm13509-201ENSMUST00000119733 1308 ntBASIC22.07■■□□□ 1.12
Trim56Q80VI1 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Trim56Q80VI1 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Trim56Q80VI1 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Trim56Q80VI1 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Trim56Q80VI1 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC22.07■■□□□ 1.12
Trim56Q80VI1 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC22.07■■□□□ 1.12
Trim56Q80VI1 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Trim56Q80VI1 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC22.07■■□□□ 1.12
Trim56Q80VI1 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
Trim56Q80VI1 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Trim56Q80VI1 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Trim56Q80VI1 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Trim56Q80VI1 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trim56Q80VI1 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC22.06■■□□□ 1.12
Trim56Q80VI1 CT025689.6-201ENSMUST00000224991 1104 ntBASIC22.06■■□□□ 1.12
Trim56Q80VI1 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC22.06■■□□□ 1.12
Trim56Q80VI1 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trim56Q80VI1 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC22.06■■□□□ 1.12
Trim56Q80VI1 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
Trim56Q80VI1 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Trim56Q80VI1 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trim56Q80VI1 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trim56Q80VI1 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Trim56Q80VI1 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC22.05■■□□□ 1.12
Trim56Q80VI1 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Trim56Q80VI1 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trim56Q80VI1 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trim56Q80VI1 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Trim56Q80VI1 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trim56Q80VI1 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms