Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.23■□□□□ 0.99
Col11a1Q61245 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.23■□□□□ 0.99
Col11a1Q61245 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col11a1Q61245 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
Col11a1Q61245 AC156016.1-201ENSMUST00000227190 1035 ntBASIC21.23■□□□□ 0.99
Col11a1Q61245 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Col11a1Q61245 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Col11a1Q61245 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col11a1Q61245 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col11a1Q61245 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col11a1Q61245 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Col11a1Q61245 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col11a1Q61245 Gm15375-201ENSMUST00000119510 849 ntBASIC21.22■□□□□ 0.99
Col11a1Q61245 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC21.22■□□□□ 0.99
Col11a1Q61245 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Col11a1Q61245 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Col11a1Q61245 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col11a1Q61245 Gm37292-201ENSMUST00000192062 758 ntBASIC21.22■□□□□ 0.99
Col11a1Q61245 Gm42545-201ENSMUST00000202755 922 ntBASIC21.22■□□□□ 0.99
Col11a1Q61245 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col11a1Q61245 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC21.22■□□□□ 0.99
Col11a1Q61245 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Col11a1Q61245 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC21.21■□□□□ 0.99
Col11a1Q61245 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col11a1Q61245 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col11a1Q61245 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col11a1Q61245 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col11a1Q61245 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col11a1Q61245 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col11a1Q61245 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col11a1Q61245 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Col11a1Q61245 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC21.21■□□□□ 0.99
Col11a1Q61245 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
Col11a1Q61245 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
Col11a1Q61245 Odf3b-204ENSMUST00000227834 930 ntBASIC21.2■□□□□ 0.98
Col11a1Q61245 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Col11a1Q61245 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Col11a1Q61245 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col11a1Q61245 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col11a1Q61245 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col11a1Q61245 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC21.2■□□□□ 0.98
Col11a1Q61245 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Col11a1Q61245 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Col11a1Q61245 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col11a1Q61245 AC107452.1-201ENSMUST00000227963 481 ntBASIC21.19■□□□□ 0.98
Col11a1Q61245 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col11a1Q61245 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col11a1Q61245 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col11a1Q61245 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col11a1Q61245 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC21.18■□□□□ 0.98
Col11a1Q61245 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col11a1Q61245 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col11a1Q61245 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col11a1Q61245 Gm37352-201ENSMUST00000193908 2181 ntBASIC21.18■□□□□ 0.98
Col11a1Q61245 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col11a1Q61245 AC124581.1-201ENSMUST00000225416 1399 ntBASIC21.18■□□□□ 0.98
Col11a1Q61245 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col11a1Q61245 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col11a1Q61245 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col11a1Q61245 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col11a1Q61245 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col11a1Q61245 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col11a1Q61245 Gm23634-201ENSMUST00000175071 91 ntBASIC21.17■□□□□ 0.98
Col11a1Q61245 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC21.17■□□□□ 0.98
Col11a1Q61245 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col11a1Q61245 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col11a1Q61245 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Col11a1Q61245 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col11a1Q61245 Gm7712-202ENSMUST00000222331 1510 ntBASIC21.16■□□□□ 0.98
Col11a1Q61245 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col11a1Q61245 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col11a1Q61245 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col11a1Q61245 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col11a1Q61245 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col11a1Q61245 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.16■□□□□ 0.98
Col11a1Q61245 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col11a1Q61245 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col11a1Q61245 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col11a1Q61245 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col11a1Q61245 Gm10138-203ENSMUST00000206952 366 ntBASIC21.15■□□□□ 0.98
Col11a1Q61245 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col11a1Q61245 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col11a1Q61245 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col11a1Q61245 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col11a1Q61245 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col11a1Q61245 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC21.15■□□□□ 0.98
Col11a1Q61245 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC21.15■□□□□ 0.98
Col11a1Q61245 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
Col11a1Q61245 Gm18032-201ENSMUST00000222541 538 ntBASIC21.15■□□□□ 0.98
Col11a1Q61245 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col11a1Q61245 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col11a1Q61245 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col11a1Q61245 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Col11a1Q61245 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Col11a1Q61245 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col11a1Q61245 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col11a1Q61245 Gm6345-202ENSMUST00000180900 204 ntBASIC21.14■□□□□ 0.97
Col11a1Q61245 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Col11a1Q61245 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC21.14■□□□□ 0.97
Col11a1Q61245 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms