Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Prpf40aQ9R1C7 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
Prpf40aQ9R1C7 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Prpf40aQ9R1C7 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Prpf40aQ9R1C7 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
Prpf40aQ9R1C7 Gm5874-201ENSMUST00000096101 508 ntBASIC20.58■□□□□ 0.89
Prpf40aQ9R1C7 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Prpf40aQ9R1C7 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Prpf40aQ9R1C7 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Prpf40aQ9R1C7 BC021767-201ENSMUST00000126387 1716 ntBASIC20.58■□□□□ 0.88
Prpf40aQ9R1C7 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Prpf40aQ9R1C7 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Prpf40aQ9R1C7 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Prpf40aQ9R1C7 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Prpf40aQ9R1C7 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.58■□□□□ 0.88
Prpf40aQ9R1C7 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
Prpf40aQ9R1C7 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Gm7860-201ENSMUST00000121190 879 ntBASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Prpf40aQ9R1C7 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Prpf40aQ9R1C7 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Gm8495-201ENSMUST00000188740 694 ntBASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Gm42778-201ENSMUST00000199644 553 ntBASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Prpf40aQ9R1C7 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.54■□□□□ 0.88
Prpf40aQ9R1C7 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Prpf40aQ9R1C7 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.54■□□□□ 0.88
Prpf40aQ9R1C7 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Prpf40aQ9R1C7 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Prpf40aQ9R1C7 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Prpf40aQ9R1C7 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
Prpf40aQ9R1C7 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Prpf40aQ9R1C7 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Prpf40aQ9R1C7 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Prpf40aQ9R1C7 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Prpf40aQ9R1C7 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Prpf40aQ9R1C7 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Prpf40aQ9R1C7 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Prpf40aQ9R1C7 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Prpf40aQ9R1C7 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Prpf40aQ9R1C7 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Prpf40aQ9R1C7 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Prpf40aQ9R1C7 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Prpf40aQ9R1C7 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Prpf40aQ9R1C7 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC20.53■□□□□ 0.88
Prpf40aQ9R1C7 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Prpf40aQ9R1C7 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Prpf40aQ9R1C7 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Prpf40aQ9R1C7 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Prpf40aQ9R1C7 Gm13234-201ENSMUST00000120010 747 ntBASIC20.52■□□□□ 0.88
Prpf40aQ9R1C7 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Prpf40aQ9R1C7 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
Prpf40aQ9R1C7 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.87
Prpf40aQ9R1C7 Reep4-203ENSMUST00000226563 1444 ntBASIC20.52■□□□□ 0.87
Prpf40aQ9R1C7 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Prpf40aQ9R1C7 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Prpf40aQ9R1C7 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms