Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim54Q9ERP3 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Gm12896-201ENSMUST00000118430 226 ntBASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim54Q9ERP3 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim54Q9ERP3 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Trim54Q9ERP3 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trim54Q9ERP3 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
Trim54Q9ERP3 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim54Q9ERP3 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim54Q9ERP3 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim54Q9ERP3 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.26■□□□□ 0.83
Trim54Q9ERP3 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Trim54Q9ERP3 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim54Q9ERP3 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim54Q9ERP3 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim54Q9ERP3 Gm45640-201ENSMUST00000210665 1896 ntBASIC20.26■□□□□ 0.83
Trim54Q9ERP3 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Trim54Q9ERP3 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
Trim54Q9ERP3 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Gm10812-201ENSMUST00000099864 546 ntBASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim54Q9ERP3 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim54Q9ERP3 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Trim54Q9ERP3 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trim54Q9ERP3 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim54Q9ERP3 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC20.24■□□□□ 0.83
Trim54Q9ERP3 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim54Q9ERP3 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim54Q9ERP3 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trim54Q9ERP3 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Trim54Q9ERP3 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.24■□□□□ 0.83
Trim54Q9ERP3 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trim54Q9ERP3 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim54Q9ERP3 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC20.23■□□□□ 0.83
Trim54Q9ERP3 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC20.23■□□□□ 0.83
Trim54Q9ERP3 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Trim54Q9ERP3 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim54Q9ERP3 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim54Q9ERP3 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim54Q9ERP3 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim54Q9ERP3 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim54Q9ERP3 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim54Q9ERP3 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim54Q9ERP3 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim54Q9ERP3 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC20.21■□□□□ 0.83
Trim54Q9ERP3 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim54Q9ERP3 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim54Q9ERP3 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim54Q9ERP3 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms