Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vps53Q8CCB4 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vps53Q8CCB4 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Vps53Q8CCB4 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vps53Q8CCB4 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Vps53Q8CCB4 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC21.76■■□□□ 1.07
Vps53Q8CCB4 Gm7514-201ENSMUST00000209475 934 ntBASIC21.76■■□□□ 1.07
Vps53Q8CCB4 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vps53Q8CCB4 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Vps53Q8CCB4 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Vps53Q8CCB4 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vps53Q8CCB4 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Vps53Q8CCB4 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Vps53Q8CCB4 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Vps53Q8CCB4 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Vps53Q8CCB4 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Vps53Q8CCB4 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Vps53Q8CCB4 AC124603.1-201ENSMUST00000223843 308 ntBASIC21.74■■□□□ 1.07
Vps53Q8CCB4 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Vps53Q8CCB4 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Vps53Q8CCB4 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Vps53Q8CCB4 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Vps53Q8CCB4 Gm10571-201ENSMUST00000097869 1638 ntBASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Vps53Q8CCB4 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vps53Q8CCB4 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vps53Q8CCB4 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vps53Q8CCB4 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vps53Q8CCB4 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC21.71■■□□□ 1.07
Vps53Q8CCB4 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC21.71■■□□□ 1.07
Vps53Q8CCB4 Ap3s1-204ENSMUST00000225520 957 ntBASIC21.71■■□□□ 1.07
Vps53Q8CCB4 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Vps53Q8CCB4 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vps53Q8CCB4 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Vps53Q8CCB4 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vps53Q8CCB4 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC21.71■■□□□ 1.07
Vps53Q8CCB4 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
Vps53Q8CCB4 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC21.7■■□□□ 1.06
Vps53Q8CCB4 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vps53Q8CCB4 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Vps53Q8CCB4 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Vps53Q8CCB4 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vps53Q8CCB4 Gm12441-201ENSMUST00000121806 588 ntBASIC21.7■■□□□ 1.06
Vps53Q8CCB4 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Vps53Q8CCB4 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vps53Q8CCB4 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.7■■□□□ 1.06
Vps53Q8CCB4 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vps53Q8CCB4 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vps53Q8CCB4 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vps53Q8CCB4 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps53Q8CCB4 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 57.5 ms