Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ubp1Q811S7 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ubp1Q811S7 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ubp1Q811S7 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ubp1Q811S7 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ubp1Q811S7 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Ubp1Q811S7 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ubp1Q811S7 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ubp1Q811S7 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.42■□□□□ 0.54
Ubp1Q811S7 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Ubp1Q811S7 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Ubp1Q811S7 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ubp1Q811S7 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ubp1Q811S7 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ubp1Q811S7 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ubp1Q811S7 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ubp1Q811S7 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ubp1Q811S7 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ubp1Q811S7 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ubp1Q811S7 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ubp1Q811S7 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC18.41■□□□□ 0.54
Ubp1Q811S7 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Ubp1Q811S7 Gm13534-201ENSMUST00000121169 513 ntBASIC18.41■□□□□ 0.54
Ubp1Q811S7 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Ubp1Q811S7 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.41■□□□□ 0.54
Ubp1Q811S7 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ubp1Q811S7 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Gm27405-201ENSMUST00000184201 112 ntBASIC18.4■□□□□ 0.54
Ubp1Q811S7 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ubp1Q811S7 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Ubp1Q811S7 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ubp1Q811S7 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ubp1Q811S7 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.39■□□□□ 0.53
Ubp1Q811S7 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Ubp1Q811S7 Gm7291-201ENSMUST00000199147 382 ntBASIC18.39■□□□□ 0.53
Ubp1Q811S7 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC18.39■□□□□ 0.53
Ubp1Q811S7 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC18.39■□□□□ 0.53
Ubp1Q811S7 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ubp1Q811S7 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.39■□□□□ 0.53
Ubp1Q811S7 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ubp1Q811S7 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ubp1Q811S7 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ubp1Q811S7 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ubp1Q811S7 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ubp1Q811S7 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC18.38■□□□□ 0.53
Ubp1Q811S7 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Gm26971-201ENSMUST00000182423 1072 ntBASIC18.38■□□□□ 0.53
Ubp1Q811S7 Gm6420-201ENSMUST00000193885 723 ntBASIC18.38■□□□□ 0.53
Ubp1Q811S7 Slc35b2-207ENSMUST00000226086 850 ntBASIC18.38■□□□□ 0.53
Ubp1Q811S7 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ubp1Q811S7 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Nespas-201ENSMUST00000143738 1083 ntBASIC18.37■□□□□ 0.53
Ubp1Q811S7 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.37■□□□□ 0.53
Ubp1Q811S7 AC164629.5-201ENSMUST00000220387 632 ntBASIC18.37■□□□□ 0.53
Ubp1Q811S7 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ubp1Q811S7 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms