Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RAB43-208ENST00000615093 783 ntTSL 5 BASIC25.67■■□□□ 1.7
VPS53Q5VIR6 MIR6821-201ENST00000617625 74 ntBASIC25.67■■□□□ 1.7
VPS53Q5VIR6 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC25.67■■□□□ 1.7
VPS53Q5VIR6 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC25.67■■□□□ 1.7
VPS53Q5VIR6 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
VPS53Q5VIR6 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
VPS53Q5VIR6 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC25.66■■□□□ 1.7
VPS53Q5VIR6 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
VPS53Q5VIR6 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
VPS53Q5VIR6 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
VPS53Q5VIR6 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
VPS53Q5VIR6 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
VPS53Q5VIR6 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
VPS53Q5VIR6 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
VPS53Q5VIR6 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC25.66■■□□□ 1.7
VPS53Q5VIR6 AC055733.4-201ENST00000638462 1354 ntBASIC25.66■■□□□ 1.7
VPS53Q5VIR6 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC25.66■■□□□ 1.7
VPS53Q5VIR6 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
VPS53Q5VIR6 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC25.65■■□□□ 1.7
VPS53Q5VIR6 ME2-206ENST00000638410 2289 ntTSL 5 BASIC25.65■■□□□ 1.7
VPS53Q5VIR6 ME2-210ENST00000639255 2262 ntTSL 5 BASIC25.65■■□□□ 1.7
VPS53Q5VIR6 AP006587.3-201ENST00000525742 1516 ntBASIC25.65■■□□□ 1.7
VPS53Q5VIR6 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
VPS53Q5VIR6 AC123595.1-201ENST00000440769 1046 ntBASIC25.65■■□□□ 1.7
VPS53Q5VIR6 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
VPS53Q5VIR6 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
VPS53Q5VIR6 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
VPS53Q5VIR6 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
VPS53Q5VIR6 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 HACD1-201ENST00000326961 773 ntTSL 2 BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 PLD4-205ENST00000553861 667 ntTSL 2 BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 CCDC92B-201ENST00000575506 885 ntBASIC25.64■■□□□ 1.7
VPS53Q5VIR6 TERF1P2-201ENST00000583350 1212 ntBASIC25.64■■□□□ 1.7
VPS53Q5VIR6 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
VPS53Q5VIR6 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC25.64■■□□□ 1.69
VPS53Q5VIR6 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC25.64■■□□□ 1.69
VPS53Q5VIR6 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
VPS53Q5VIR6 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
VPS53Q5VIR6 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
VPS53Q5VIR6 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC25.63■■□□□ 1.69
VPS53Q5VIR6 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
VPS53Q5VIR6 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC25.63■■□□□ 1.69
VPS53Q5VIR6 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
VPS53Q5VIR6 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
VPS53Q5VIR6 LINC02228-203ENST00000641970 1355 ntBASIC25.63■■□□□ 1.69
VPS53Q5VIR6 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
VPS53Q5VIR6 AC009237.3-201ENST00000393279 1427 ntBASIC25.63■■□□□ 1.69
VPS53Q5VIR6 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC25.63■■□□□ 1.69
VPS53Q5VIR6 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC25.63■■□□□ 1.69
VPS53Q5VIR6 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
VPS53Q5VIR6 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 DUX4L2-201ENST00000561772 1275 ntBASIC25.62■■□□□ 1.69
VPS53Q5VIR6 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 DUX4L6-201ENST00000626483 1275 ntBASIC25.62■■□□□ 1.69
VPS53Q5VIR6 DUX4L1-201ENST00000627662 1275 ntBASIC25.62■■□□□ 1.69
VPS53Q5VIR6 DUX4L8-201ENST00000629013 1275 ntBASIC25.62■■□□□ 1.69
VPS53Q5VIR6 DUX4L3-201ENST00000630187 1275 ntBASIC25.62■■□□□ 1.69
VPS53Q5VIR6 DUX4L7-201ENST00000630678 1275 ntBASIC25.62■■□□□ 1.69
VPS53Q5VIR6 DUX4L5-201ENST00000630834 1275 ntBASIC25.62■■□□□ 1.69
VPS53Q5VIR6 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
VPS53Q5VIR6 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
VPS53Q5VIR6 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
VPS53Q5VIR6 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC25.61■■□□□ 1.69
VPS53Q5VIR6 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC25.61■■□□□ 1.69
VPS53Q5VIR6 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC25.61■■□□□ 1.69
VPS53Q5VIR6 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
VPS53Q5VIR6 AL034346.1-201ENST00000568244 1277 ntBASIC25.61■■□□□ 1.69
VPS53Q5VIR6 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC25.61■■□□□ 1.69
VPS53Q5VIR6 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC25.61■■□□□ 1.69
VPS53Q5VIR6 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
VPS53Q5VIR6 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC25.61■■□□□ 1.69
VPS53Q5VIR6 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
VPS53Q5VIR6 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC25.6■■□□□ 1.69
VPS53Q5VIR6 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC25.6■■□□□ 1.69
VPS53Q5VIR6 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
VPS53Q5VIR6 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC25.6■■□□□ 1.69
VPS53Q5VIR6 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms