Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3bQ3ULL6 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3bQ3ULL6 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3bQ3ULL6 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
Upf3bQ3ULL6 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3bQ3ULL6 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3bQ3ULL6 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3bQ3ULL6 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3bQ3ULL6 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.02■□□□□ 0.8
Upf3bQ3ULL6 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3bQ3ULL6 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Upf3bQ3ULL6 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3bQ3ULL6 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3bQ3ULL6 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
Upf3bQ3ULL6 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Upf3bQ3ULL6 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Upf3bQ3ULL6 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.02■□□□□ 0.79
Upf3bQ3ULL6 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Upf3bQ3ULL6 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Upf3bQ3ULL6 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3bQ3ULL6 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3bQ3ULL6 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3bQ3ULL6 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.01■□□□□ 0.79
Upf3bQ3ULL6 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3bQ3ULL6 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3bQ3ULL6 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3bQ3ULL6 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.01■□□□□ 0.79
Upf3bQ3ULL6 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3bQ3ULL6 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3bQ3ULL6 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3bQ3ULL6 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3bQ3ULL6 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Gm5112-201ENSMUST00000204407 2368 ntBASIC20■□□□□ 0.79
Upf3bQ3ULL6 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC20■□□□□ 0.79
Upf3bQ3ULL6 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Upf3bQ3ULL6 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Gm10655-201ENSMUST00000098658 1397 ntBASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Gm27405-201ENSMUST00000184201 112 ntBASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3bQ3ULL6 Golph3-205ENSMUST00000228671 2842 ntBASIC19.98■□□□□ 0.79
Upf3bQ3ULL6 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3bQ3ULL6 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3bQ3ULL6 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3bQ3ULL6 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3bQ3ULL6 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3bQ3ULL6 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3bQ3ULL6 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3bQ3ULL6 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3bQ3ULL6 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3bQ3ULL6 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3bQ3ULL6 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Gm6420-201ENSMUST00000193885 723 ntBASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.97■□□□□ 0.79
Upf3bQ3ULL6 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms