Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HADHAP40939 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HADHAP40939 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.49■■□□□ 1.03
HADHAP40939 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HADHAP40939 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HADHAP40939 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HADHAP40939 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HADHAP40939 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
HADHAP40939 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
HADHAP40939 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.48■■□□□ 1.03
HADHAP40939 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
HADHAP40939 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
HADHAP40939 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
HADHAP40939 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.48■■□□□ 1.03
HADHAP40939 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HADHAP40939 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.48■■□□□ 1.03
HADHAP40939 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.48■■□□□ 1.03
HADHAP40939 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HADHAP40939 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.48■■□□□ 1.03
HADHAP40939 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HADHAP40939 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HADHAP40939 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
HADHAP40939 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.48■■□□□ 1.03
HADHAP40939 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.48■■□□□ 1.03
HADHAP40939 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.48■■□□□ 1.03
HADHAP40939 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.48■■□□□ 1.03
HADHAP40939 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.48■■□□□ 1.03
HADHAP40939 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HADHAP40939 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HADHAP40939 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HADHAP40939 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HADHAP40939 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
HADHAP40939 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.48■■□□□ 1.03
HADHAP40939 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HADHAP40939 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HADHAP40939 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
HADHAP40939 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
HADHAP40939 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.47■■□□□ 1.03
HADHAP40939 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
HADHAP40939 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.47■■□□□ 1.03
HADHAP40939 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.47■■□□□ 1.03
HADHAP40939 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HADHAP40939 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HADHAP40939 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HADHAP40939 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HADHAP40939 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HADHAP40939 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.47■■□□□ 1.03
HADHAP40939 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HADHAP40939 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
HADHAP40939 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.46■■□□□ 1.03
HADHAP40939 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.46■■□□□ 1.03
HADHAP40939 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.46■■□□□ 1.03
HADHAP40939 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.46■■□□□ 1.03
HADHAP40939 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HADHAP40939 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
HADHAP40939 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.46■■□□□ 1.03
HADHAP40939 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.46■■□□□ 1.03
HADHAP40939 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HADHAP40939 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
HADHAP40939 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
HADHAP40939 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.45■■□□□ 1.02
HADHAP40939 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HADHAP40939 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HADHAP40939 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
HADHAP40939 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HADHAP40939 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.45■■□□□ 1.02
HADHAP40939 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HADHAP40939 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.45■■□□□ 1.02
HADHAP40939 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.45■■□□□ 1.02
HADHAP40939 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HADHAP40939 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HADHAP40939 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HADHAP40939 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
HADHAP40939 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HADHAP40939 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.45■■□□□ 1.02
HADHAP40939 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HADHAP40939 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HADHAP40939 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HADHAP40939 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.44■■□□□ 1.02
HADHAP40939 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
HADHAP40939 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
HADHAP40939 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HADHAP40939 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.44■■□□□ 1.02
HADHAP40939 AC105265.2-201ENST00000467189 838 ntBASIC21.44■■□□□ 1.02
HADHAP40939 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.44■■□□□ 1.02
HADHAP40939 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HADHAP40939 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HADHAP40939 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
HADHAP40939 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.44■■□□□ 1.02
HADHAP40939 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HADHAP40939 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HADHAP40939 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.43■■□□□ 1.02
HADHAP40939 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
HADHAP40939 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.43■■□□□ 1.02
HADHAP40939 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HADHAP40939 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HADHAP40939 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HADHAP40939 AL354811.1-201ENST00000610286 706 ntBASIC21.43■■□□□ 1.02
HADHAP40939 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.43■■□□□ 1.02
HADHAP40939 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms