Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 AL031602.1-201ENST00000633169 911 ntBASIC20.55■□□□□ 0.88
VPS4AQ9UN37 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4AQ9UN37 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 AL358852.1-201ENST00000623174 1268 ntBASIC20.54■□□□□ 0.88
VPS4AQ9UN37 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4AQ9UN37 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 MIR3181-201ENST00000578512 73 ntBASIC20.53■□□□□ 0.88
VPS4AQ9UN37 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 TSPY26P-201ENST00000476365 1326 ntBASIC20.53■□□□□ 0.88
VPS4AQ9UN37 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4AQ9UN37 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4AQ9UN37 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4AQ9UN37 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4AQ9UN37 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4AQ9UN37 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
VPS4AQ9UN37 AC123595.1-201ENST00000440769 1046 ntBASIC20.52■□□□□ 0.88
VPS4AQ9UN37 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.52■□□□□ 0.88
VPS4AQ9UN37 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4AQ9UN37 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4AQ9UN37 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4AQ9UN37 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.52■□□□□ 0.88
VPS4AQ9UN37 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4AQ9UN37 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4AQ9UN37 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS4AQ9UN37 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS4AQ9UN37 AC010542.4-201ENST00000563151 1910 ntBASIC20.51■□□□□ 0.87
VPS4AQ9UN37 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 AC006455.2-201ENST00000429931 906 ntBASIC20.51■□□□□ 0.87
VPS4AQ9UN37 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4AQ9UN37 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS4AQ9UN37 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS4AQ9UN37 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS4AQ9UN37 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS4AQ9UN37 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.5■□□□□ 0.87
VPS4AQ9UN37 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms