Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Gm45606-201ENSMUST00000209836 2795 ntBASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim39Q9ESN2 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim39Q9ESN2 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim39Q9ESN2 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim39Q9ESN2 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim39Q9ESN2 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC17.49■□□□□ 0.39
Trim39Q9ESN2 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim39Q9ESN2 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim39Q9ESN2 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim39Q9ESN2 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Trim39Q9ESN2 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Gm8493-201ENSMUST00000196881 489 ntBASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Trim39Q9ESN2 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Flvcr1-202ENSMUST00000191946 1216 ntBASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim39Q9ESN2 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.46■□□□□ 0.39
Trim39Q9ESN2 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim39Q9ESN2 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim39Q9ESN2 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim39Q9ESN2 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim39Q9ESN2 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim39Q9ESN2 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim39Q9ESN2 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC17.46■□□□□ 0.39
Trim39Q9ESN2 Wdr70-203ENSMUST00000227371 1130 ntBASIC17.46■□□□□ 0.39
Trim39Q9ESN2 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim39Q9ESN2 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Trim39Q9ESN2 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC17.46■□□□□ 0.39
Trim39Q9ESN2 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Trim39Q9ESN2 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim39Q9ESN2 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim39Q9ESN2 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim39Q9ESN2 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim39Q9ESN2 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Trim39Q9ESN2 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Trim39Q9ESN2 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Trim39Q9ESN2 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim39Q9ESN2 Gm20100-201ENSMUST00000209418 2272 ntBASIC17.45■□□□□ 0.38
Trim39Q9ESN2 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim39Q9ESN2 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms