Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Upf3bQ3ULL6 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3bQ3ULL6 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3bQ3ULL6 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3bQ3ULL6 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Upf3bQ3ULL6 Gm13534-201ENSMUST00000121169 513 ntBASIC20.1■□□□□ 0.81
Upf3bQ3ULL6 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Upf3bQ3ULL6 Gm42569-201ENSMUST00000200539 472 ntBASIC20.1■□□□□ 0.81
Upf3bQ3ULL6 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3bQ3ULL6 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3bQ3ULL6 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3bQ3ULL6 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3bQ3ULL6 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3bQ3ULL6 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3bQ3ULL6 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Upf3bQ3ULL6 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.81
Upf3bQ3ULL6 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
Upf3bQ3ULL6 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Upf3bQ3ULL6 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Upf3bQ3ULL6 Gm10849-201ENSMUST00000100397 618 ntBASIC20.08■□□□□ 0.81
Upf3bQ3ULL6 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
Upf3bQ3ULL6 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Upf3bQ3ULL6 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Upf3bQ3ULL6 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Upf3bQ3ULL6 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Upf3bQ3ULL6 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3bQ3ULL6 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.07■□□□□ 0.8
Upf3bQ3ULL6 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3bQ3ULL6 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3bQ3ULL6 Gm7514-201ENSMUST00000209475 934 ntBASIC20.07■□□□□ 0.8
Upf3bQ3ULL6 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.07■□□□□ 0.8
Upf3bQ3ULL6 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3bQ3ULL6 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3bQ3ULL6 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Upf3bQ3ULL6 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3bQ3ULL6 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC20.06■□□□□ 0.8
Upf3bQ3ULL6 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3bQ3ULL6 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3bQ3ULL6 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3bQ3ULL6 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3bQ3ULL6 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3bQ3ULL6 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3bQ3ULL6 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3bQ3ULL6 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC20.05■□□□□ 0.8
Upf3bQ3ULL6 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.05■□□□□ 0.8
Upf3bQ3ULL6 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3bQ3ULL6 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Upf3bQ3ULL6 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.05■□□□□ 0.8
Upf3bQ3ULL6 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3bQ3ULL6 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3bQ3ULL6 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3bQ3ULL6 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3bQ3ULL6 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3bQ3ULL6 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3bQ3ULL6 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3bQ3ULL6 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3bQ3ULL6 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms