Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cops4O88544 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cops4O88544 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cops4O88544 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cops4O88544 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cops4O88544 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cops4O88544 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC17.36■□□□□ 0.37
Cops4O88544 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cops4O88544 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cops4O88544 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Cops4O88544 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cops4O88544 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Cops4O88544 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cops4O88544 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cops4O88544 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cops4O88544 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC17.35■□□□□ 0.37
Cops4O88544 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 Gm45102-201ENSMUST00000207427 857 ntBASIC17.35■□□□□ 0.37
Cops4O88544 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC17.35■□□□□ 0.37
Cops4O88544 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Cops4O88544 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cops4O88544 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cops4O88544 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cops4O88544 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cops4O88544 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC17.34■□□□□ 0.37
Cops4O88544 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC17.34■□□□□ 0.37
Cops4O88544 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Cops4O88544 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC17.34■□□□□ 0.37
Cops4O88544 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC17.34■□□□□ 0.37
Cops4O88544 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC17.34■□□□□ 0.37
Cops4O88544 Dmtn-207ENSMUST00000228001 2437 ntBASIC17.34■□□□□ 0.37
Cops4O88544 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cops4O88544 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cops4O88544 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cops4O88544 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cops4O88544 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cops4O88544 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cops4O88544 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cops4O88544 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cops4O88544 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cops4O88544 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Cops4O88544 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cops4O88544 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC17.33■□□□□ 0.36
Cops4O88544 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC17.33■□□□□ 0.36
Cops4O88544 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cops4O88544 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cops4O88544 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Cops4O88544 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cops4O88544 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.32■□□□□ 0.36
Cops4O88544 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cops4O88544 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Cops4O88544 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cops4O88544 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cops4O88544 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC17.31■□□□□ 0.36
Cops4O88544 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cops4O88544 Gm15853-202ENSMUST00000195518 2041 ntBASIC17.31■□□□□ 0.36
Cops4O88544 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Cops4O88544 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Cops4O88544 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Cops4O88544 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cops4O88544 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cops4O88544 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC17.3■□□□□ 0.36
Cops4O88544 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cops4O88544 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cops4O88544 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cops4O88544 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cops4O88544 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cops4O88544 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC17.3■□□□□ 0.36
Cops4O88544 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Cops4O88544 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.3■□□□□ 0.36
Cops4O88544 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Cops4O88544 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cops4O88544 Gm10571-201ENSMUST00000097869 1638 ntBASIC17.29■□□□□ 0.36
Cops4O88544 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cops4O88544 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms