Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp49Q6P9L4 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp49Q6P9L4 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp49Q6P9L4 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp49Q6P9L4 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Gm15853-202ENSMUST00000195518 2041 ntBASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp49Q6P9L4 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC21.2■□□□□ 0.98
Usp49Q6P9L4 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp49Q6P9L4 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp49Q6P9L4 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp49Q6P9L4 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp49Q6P9L4 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp49Q6P9L4 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp49Q6P9L4 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp49Q6P9L4 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
Usp49Q6P9L4 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp49Q6P9L4 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp49Q6P9L4 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp49Q6P9L4 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp49Q6P9L4 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp49Q6P9L4 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp49Q6P9L4 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp49Q6P9L4 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp49Q6P9L4 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp49Q6P9L4 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC21.18■□□□□ 0.98
Usp49Q6P9L4 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC21.18■□□□□ 0.98
Usp49Q6P9L4 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp49Q6P9L4 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Usp49Q6P9L4 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC21.18■□□□□ 0.98
Usp49Q6P9L4 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp49Q6P9L4 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC21.18■□□□□ 0.98
Usp49Q6P9L4 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC21.18■□□□□ 0.98
Usp49Q6P9L4 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC21.18■□□□□ 0.98
Usp49Q6P9L4 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC21.18■□□□□ 0.98
Usp49Q6P9L4 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Usp49Q6P9L4 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp49Q6P9L4 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC21.17■□□□□ 0.98
Usp49Q6P9L4 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp49Q6P9L4 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.17■□□□□ 0.98
Usp49Q6P9L4 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC21.17■□□□□ 0.98
Usp49Q6P9L4 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Usp49Q6P9L4 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Usp49Q6P9L4 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp49Q6P9L4 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp49Q6P9L4 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp49Q6P9L4 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp49Q6P9L4 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp49Q6P9L4 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp49Q6P9L4 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp49Q6P9L4 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Usp49Q6P9L4 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Usp49Q6P9L4 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp49Q6P9L4 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp49Q6P9L4 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC21.16■□□□□ 0.98
Usp49Q6P9L4 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
Usp49Q6P9L4 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Usp49Q6P9L4 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp49Q6P9L4 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC21.15■□□□□ 0.98
Usp49Q6P9L4 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp49Q6P9L4 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp49Q6P9L4 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms