Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Shkbp1Q6P7W2 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Shkbp1Q6P7W2 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Shkbp1Q6P7W2 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
Shkbp1Q6P7W2 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Shkbp1Q6P7W2 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.76■□□□□ 0.75
Shkbp1Q6P7W2 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.76■□□□□ 0.75
Shkbp1Q6P7W2 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Shkbp1Q6P7W2 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Shkbp1Q6P7W2 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Shkbp1Q6P7W2 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Shkbp1Q6P7W2 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.76■□□□□ 0.75
Shkbp1Q6P7W2 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Shkbp1Q6P7W2 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Gm2559-201ENSMUST00000201323 363 ntBASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Shkbp1Q6P7W2 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Shkbp1Q6P7W2 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.74■□□□□ 0.75
Shkbp1Q6P7W2 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
Shkbp1Q6P7W2 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Shkbp1Q6P7W2 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
Shkbp1Q6P7W2 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Shkbp1Q6P7W2 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.74■□□□□ 0.75
Shkbp1Q6P7W2 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.74■□□□□ 0.75
Shkbp1Q6P7W2 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Shkbp1Q6P7W2 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Shkbp1Q6P7W2 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Gm20634-201ENSMUST00000090779 2956 ntBASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Shkbp1Q6P7W2 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Gm44549-201ENSMUST00000208351 577 ntBASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Dio3-201ENSMUST00000097228 1449 ntBASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Hsf1-207ENSMUST00000228371 2102 ntBASIC19.72■□□□□ 0.75
Shkbp1Q6P7W2 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC19.71■□□□□ 0.75
Shkbp1Q6P7W2 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Shkbp1Q6P7W2 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Shkbp1Q6P7W2 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Shkbp1Q6P7W2 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Shkbp1Q6P7W2 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Shkbp1Q6P7W2 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Shkbp1Q6P7W2 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Shkbp1Q6P7W2 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.71■□□□□ 0.75
Shkbp1Q6P7W2 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shkbp1Q6P7W2 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
Shkbp1Q6P7W2 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shkbp1Q6P7W2 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shkbp1Q6P7W2 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.7■□□□□ 0.74
Shkbp1Q6P7W2 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.7■□□□□ 0.74
Shkbp1Q6P7W2 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shkbp1Q6P7W2 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shkbp1Q6P7W2 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shkbp1Q6P7W2 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Shkbp1Q6P7W2 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Shkbp1Q6P7W2 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Shkbp1Q6P7W2 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Gm34220-201ENSMUST00000223001 2709 ntBASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 71.9 ms