Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim40Q3UWA4 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim40Q3UWA4 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim40Q3UWA4 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Gm42501-201ENSMUST00000200220 1026 ntBASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Gm15820-201ENSMUST00000201566 728 ntBASIC17.72■□□□□ 0.43
Trim40Q3UWA4 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Trim40Q3UWA4 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Gm9870-201ENSMUST00000063874 645 ntBASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim40Q3UWA4 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim40Q3UWA4 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim40Q3UWA4 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC17.7■□□□□ 0.42
Trim40Q3UWA4 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Trim40Q3UWA4 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim40Q3UWA4 Gm15853-202ENSMUST00000195518 2041 ntBASIC17.7■□□□□ 0.42
Trim40Q3UWA4 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Trim40Q3UWA4 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim40Q3UWA4 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC17.7■□□□□ 0.42
Trim40Q3UWA4 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim40Q3UWA4 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Trim40Q3UWA4 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC17.69■□□□□ 0.42
Trim40Q3UWA4 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC17.69■□□□□ 0.42
Trim40Q3UWA4 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC17.69■□□□□ 0.42
Trim40Q3UWA4 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim40Q3UWA4 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC17.69■□□□□ 0.42
Trim40Q3UWA4 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim40Q3UWA4 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.69■□□□□ 0.42
Trim40Q3UWA4 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim40Q3UWA4 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim40Q3UWA4 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC17.69■□□□□ 0.42
Trim40Q3UWA4 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim40Q3UWA4 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Gm37811-201ENSMUST00000192416 2601 ntBASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Gm7417-201ENSMUST00000192950 473 ntBASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Gm32699-201ENSMUST00000221728 1988 ntBASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim40Q3UWA4 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim40Q3UWA4 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim40Q3UWA4 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC17.67■□□□□ 0.42
Trim40Q3UWA4 AC154266.1-201ENSMUST00000223190 503 ntBASIC17.67■□□□□ 0.42
Trim40Q3UWA4 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim40Q3UWA4 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim40Q3UWA4 Gm42922-201ENSMUST00000195887 2078 ntBASIC17.67■□□□□ 0.42
Trim40Q3UWA4 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 AC123834.2-201ENSMUST00000224038 2340 ntBASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Gm10571-201ENSMUST00000097869 1638 ntBASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim40Q3UWA4 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms