Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC17.25■□□□□ 0.35
Col5a1O88207 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col5a1O88207 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col5a1O88207 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col5a1O88207 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col5a1O88207 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.25■□□□□ 0.35
Col5a1O88207 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col5a1O88207 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col5a1O88207 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col5a1O88207 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col5a1O88207 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col5a1O88207 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col5a1O88207 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col5a1O88207 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col5a1O88207 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.24■□□□□ 0.35
Col5a1O88207 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col5a1O88207 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col5a1O88207 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
Col5a1O88207 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Col5a1O88207 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Col5a1O88207 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col5a1O88207 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col5a1O88207 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col5a1O88207 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col5a1O88207 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Col5a1O88207 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Col5a1O88207 Gm21596-201ENSMUST00000178049 1316 ntBASIC17.22■□□□□ 0.35
Col5a1O88207 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Col5a1O88207 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
Col5a1O88207 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Col5a1O88207 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Col5a1O88207 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Col5a1O88207 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.22■□□□□ 0.35
Col5a1O88207 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.22■□□□□ 0.35
Col5a1O88207 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col5a1O88207 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col5a1O88207 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col5a1O88207 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.22■□□□□ 0.35
Col5a1O88207 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.21■□□□□ 0.35
Col5a1O88207 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC17.21■□□□□ 0.35
Col5a1O88207 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Gm20100-201ENSMUST00000209418 2272 ntBASIC17.21■□□□□ 0.35
Col5a1O88207 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.21■□□□□ 0.35
Col5a1O88207 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Gm10231-201ENSMUST00000181584 441 ntBASIC17.21■□□□□ 0.35
Col5a1O88207 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC17.21■□□□□ 0.35
Col5a1O88207 Gm10175-202ENSMUST00000208752 441 ntBASIC17.21■□□□□ 0.35
Col5a1O88207 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col5a1O88207 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Col5a1O88207 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Col5a1O88207 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Col5a1O88207 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col5a1O88207 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col5a1O88207 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Col5a1O88207 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.2■□□□□ 0.34
Col5a1O88207 Gm10459-201ENSMUST00000202708 1155 ntBASIC17.2■□□□□ 0.34
Col5a1O88207 AC154649.1-201ENSMUST00000227392 384 ntBASIC17.2■□□□□ 0.34
Col5a1O88207 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col5a1O88207 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col5a1O88207 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col5a1O88207 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col5a1O88207 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC17.2■□□□□ 0.34
Col5a1O88207 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.2■□□□□ 0.34
Col5a1O88207 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col5a1O88207 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col5a1O88207 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col5a1O88207 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col5a1O88207 Gm27741-201ENSMUST00000185060 237 ntBASIC17.19■□□□□ 0.34
Col5a1O88207 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col5a1O88207 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
Col5a1O88207 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col5a1O88207 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col5a1O88207 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Col5a1O88207 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col5a1O88207 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col5a1O88207 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col5a1O88207 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col5a1O88207 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col5a1O88207 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col5a1O88207 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col5a1O88207 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col5a1O88207 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col5a1O88207 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC17.18■□□□□ 0.34
Col5a1O88207 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Col5a1O88207 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC17.18■□□□□ 0.34
Col5a1O88207 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
Col5a1O88207 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.18■□□□□ 0.34
Col5a1O88207 Gm32699-201ENSMUST00000221728 1988 ntBASIC17.18■□□□□ 0.34
Col5a1O88207 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col5a1O88207 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms