Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 AC012414.1-201ENST00000556676 535 ntBASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 AC080038.3-201ENST00000623346 1952 ntBASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 AC123595.1-201ENST00000440769 1046 ntBASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 AC022517.1-201ENST00000592429 346 ntBASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHB3Q9Y5E6 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PCDHB3Q9Y5E6 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.96■□□□□ 0.95
PCDHB3Q9Y5E6 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHB3Q9Y5E6 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHB3Q9Y5E6 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHB3Q9Y5E6 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHB3Q9Y5E6 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHB3Q9Y5E6 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.96■□□□□ 0.95
PCDHB3Q9Y5E6 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.96■□□□□ 0.95
PCDHB3Q9Y5E6 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.96■□□□□ 0.95
PCDHB3Q9Y5E6 AL137060.1-201ENST00000618151 2648 ntBASIC20.96■□□□□ 0.95
PCDHB3Q9Y5E6 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.96■□□□□ 0.95
PCDHB3Q9Y5E6 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
PCDHB3Q9Y5E6 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 KRT18P5-201ENST00000436075 1291 ntBASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 RARRES2P11-201ENST00000635158 484 ntBASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHB3Q9Y5E6 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 AC087742.1-201ENST00000575880 1738 ntBASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHB3Q9Y5E6 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 AC090192.1-201ENST00000517740 490 ntBASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 AC068587.7-201ENST00000641602 218 ntBASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDHB3Q9Y5E6 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHB3Q9Y5E6 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHB3Q9Y5E6 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHB3Q9Y5E6 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms